Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 RPL28-203ENST00000428193 573 ntTSL 2 BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 LINC00926-202ENST00000502027 2141 ntTSL 2 BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 RPL28-207ENST00000558815 616 ntTSL 2 BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 AP005482.1-201ENST00000563722 1273 ntBASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 NAA38-206ENST00000576384 424 ntTSL 2 BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 CICP24-201ENST00000605464 2705 ntBASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 METTL26-214ENST00000614890 801 ntTSL 3 BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CLIP3Q96DZ5 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 LBX2-201ENST00000341396 886 ntTSL 3 BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 BCRP2-202ENST00000447763 634 ntBASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 BCRP6-201ENST00000510112 632 ntBASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 BCRP7-201ENST00000511549 544 ntBASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 AC104989.1-201ENST00000519711 778 ntBASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 AC068587.3-201ENST00000526613 355 ntBASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 AC015910.1-201ENST00000579400 975 ntBASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 RPSAP52-203ENST00000622976 1023 ntBASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CLIP3Q96DZ5 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC14.77□□□□□ -0.04
CLIP3Q96DZ5 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
CLIP3Q96DZ5 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CLIP3Q96DZ5 AMT-233ENST00000636522 1620 ntTSL 2 BASIC14.77□□□□□ -0.04
CLIP3Q96DZ5 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC14.77□□□□□ -0.04
CLIP3Q96DZ5 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
CLIP3Q96DZ5 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC14.77□□□□□ -0.04
CLIP3Q96DZ5 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.77□□□□□ -0.04
CLIP3Q96DZ5 AC126177.1-201ENST00000547829 2218 ntBASIC14.77□□□□□ -0.04
CLIP3Q96DZ5 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CLIP3Q96DZ5 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CLIP3Q96DZ5 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
CLIP3Q96DZ5 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CLIP3Q96DZ5 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CLIP3Q96DZ5 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms