Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC14.08□□□□□ -0.16
RNF4P78317 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
RNF4P78317 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
RNF4P78317 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RNF4P78317 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC14.08□□□□□ -0.16
RNF4P78317 RPL7P3-201ENST00000441388 714 ntBASIC14.08□□□□□ -0.16
RNF4P78317 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC14.08□□□□□ -0.16
RNF4P78317 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
RNF4P78317 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RNF4P78317 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RNF4P78317 AC104989.1-201ENST00000519711 778 ntBASIC14.08□□□□□ -0.16
RNF4P78317 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC14.08□□□□□ -0.16
RNF4P78317 SNX29P1-201ENST00000548357 1007 ntBASIC14.08□□□□□ -0.16
RNF4P78317 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC14.08□□□□□ -0.16
RNF4P78317 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC14.08□□□□□ -0.16
RNF4P78317 DUX4L47-201ENST00000566374 394 ntBASIC14.08□□□□□ -0.16
RNF4P78317 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
RNF4P78317 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC14.08□□□□□ -0.16
RNF4P78317 RPS24-214ENST00000613865 538 ntTSL 5 BASIC14.08□□□□□ -0.16
RNF4P78317 LARP4-220ENST00000615080 856 ntTSL 5 BASIC14.08□□□□□ -0.16
RNF4P78317 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
RNF4P78317 WNT11-204ENST00000621122 789 ntTSL 5 BASIC14.08□□□□□ -0.16
RNF4P78317 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RNF4P78317 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC14.08□□□□□ -0.16
RNF4P78317 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RNF4P78317 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RNF4P78317 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
RNF4P78317 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
RNF4P78317 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RNF4P78317 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RNF4P78317 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RNF4P78317 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
RNF4P78317 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RNF4P78317 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
RNF4P78317 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RNF4P78317 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
RNF4P78317 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RNF4P78317 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
RNF4P78317 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC14.08□□□□□ -0.16
RNF4P78317 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC14.08□□□□□ -0.16
RNF4P78317 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC14.08□□□□□ -0.16
RNF4P78317 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RNF4P78317 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RNF4P78317 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC14.07□□□□□ -0.16
RNF4P78317 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
RNF4P78317 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RNF4P78317 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RNF4P78317 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RNF4P78317 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC14.07□□□□□ -0.16
RNF4P78317 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC14.07□□□□□ -0.16
RNF4P78317 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RNF4P78317 AC055811.4-201ENST00000624039 1754 ntBASIC14.07□□□□□ -0.16
RNF4P78317 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
RNF4P78317 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RNF4P78317 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RNF4P78317 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RNF4P78317 ANKRD19P-201ENST00000338192 862 ntBASIC14.07□□□□□ -0.16
RNF4P78317 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RNF4P78317 GZMB-202ENST00000382540 816 ntTSL 5 BASIC14.07□□□□□ -0.16
RNF4P78317 MIR658-201ENST00000385210 100 ntBASIC14.07□□□□□ -0.16
RNF4P78317 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
RNF4P78317 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC14.07□□□□□ -0.16
RNF4P78317 RPL8-205ENST00000527914 551 ntTSL 3 BASIC14.07□□□□□ -0.16
RNF4P78317 AP000812.2-201ENST00000538934 718 ntBASIC14.07□□□□□ -0.16
RNF4P78317 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC14.07□□□□□ -0.16
RNF4P78317 KRT90P-201ENST00000549264 1064 ntBASIC14.07□□□□□ -0.16
RNF4P78317 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RNF4P78317 AP005482.1-201ENST00000563722 1273 ntBASIC14.07□□□□□ -0.16
RNF4P78317 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC14.07□□□□□ -0.16
RNF4P78317 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC14.07□□□□□ -0.16
RNF4P78317 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
RNF4P78317 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
RNF4P78317 AL137783.1-201ENST00000623494 1896 ntBASIC14.07□□□□□ -0.16
RNF4P78317 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RNF4P78317 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC14.07□□□□□ -0.16
RNF4P78317 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RNF4P78317 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RNF4P78317 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC14.07□□□□□ -0.16
RNF4P78317 AC126177.1-201ENST00000547829 2218 ntBASIC14.07□□□□□ -0.16
RNF4P78317 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RNF4P78317 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC14.07□□□□□ -0.16
RNF4P78317 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC14.07□□□□□ -0.16
RNF4P78317 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RNF4P78317 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RNF4P78317 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RNF4P78317 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC14.07□□□□□ -0.16
RNF4P78317 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
RNF4P78317 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RNF4P78317 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RNF4P78317 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
RNF4P78317 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RNF4P78317 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RNF4P78317 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RNF4P78317 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC14.06□□□□□ -0.16
RNF4P78317 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RNF4P78317 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
RNF4P78317 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC14.06□□□□□ -0.16
RNF4P78317 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
RNF4P78317 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RNF4P78317 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms