Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VCPP55072 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
VCPP55072 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC16.31■□□□□ 0.2
VCPP55072 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VCPP55072 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VCPP55072 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
VCPP55072 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
VCPP55072 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VCPP55072 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VCPP55072 POR-201ENST00000394893 2532 ntTSL 5 BASIC16.3■□□□□ 0.2
VCPP55072 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VCPP55072 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC16.3■□□□□ 0.2
VCPP55072 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
VCPP55072 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
VCPP55072 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
VCPP55072 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VCPP55072 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
VCPP55072 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VCPP55072 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC16.3■□□□□ 0.2
VCPP55072 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC16.3■□□□□ 0.2
VCPP55072 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
VCPP55072 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC16.3■□□□□ 0.2
VCPP55072 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
VCPP55072 AC091046.1-201ENST00000331871 207 ntBASIC16.3■□□□□ 0.2
VCPP55072 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
VCPP55072 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VCPP55072 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VCPP55072 AL662890.1-201ENST00000396818 632 ntBASIC16.3■□□□□ 0.2
VCPP55072 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC16.3■□□□□ 0.2
VCPP55072 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC16.3■□□□□ 0.2
VCPP55072 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC16.3■□□□□ 0.2
VCPP55072 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC16.3■□□□□ 0.2
VCPP55072 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC16.3■□□□□ 0.2
VCPP55072 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC16.3■□□□□ 0.2
VCPP55072 SLED1-202ENST00000512051 380 ntBASIC16.3■□□□□ 0.2
VCPP55072 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VCPP55072 ADM-202ENST00000524948 584 ntTSL 2 BASIC16.3■□□□□ 0.2
VCPP55072 RERG-205ENST00000537647 935 ntTSL 2 BASIC16.3■□□□□ 0.2
VCPP55072 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC16.3■□□□□ 0.2
VCPP55072 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC16.3■□□□□ 0.2
VCPP55072 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC16.3■□□□□ 0.2
VCPP55072 RHOXF1P1-202ENST00000635473 501 ntBASIC16.3■□□□□ 0.2
VCPP55072 AC008687.7-202ENST00000637404 953 ntBASIC16.3■□□□□ 0.2
VCPP55072 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
VCPP55072 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VCPP55072 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VCPP55072 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VCPP55072 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VCPP55072 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VCPP55072 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VCPP55072 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC16.3■□□□□ 0.2
VCPP55072 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.3■□□□□ 0.2
VCPP55072 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VCPP55072 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VCPP55072 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC16.3■□□□□ 0.2
VCPP55072 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
VCPP55072 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCPP55072 AMT-232ENST00000636199 1546 ntTSL 5 BASIC16.29■□□□□ 0.2
VCPP55072 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
VCPP55072 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCPP55072 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCPP55072 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VCPP55072 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCPP55072 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC16.29■□□□□ 0.2
VCPP55072 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
VCPP55072 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCPP55072 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCPP55072 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCPP55072 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VCPP55072 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
VCPP55072 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCPP55072 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCPP55072 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCPP55072 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VCPP55072 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCPP55072 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCPP55072 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCPP55072 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VCPP55072 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC16.29■□□□□ 0.2
VCPP55072 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.29■□□□□ 0.2
VCPP55072 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCPP55072 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC16.29■□□□□ 0.2
VCPP55072 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16.29■□□□□ 0.2
VCPP55072 KRT90P-201ENST00000549264 1064 ntBASIC16.29■□□□□ 0.2
VCPP55072 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VCPP55072 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC16.29■□□□□ 0.2
VCPP55072 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC16.29■□□□□ 0.2
VCPP55072 AL008638.5-201ENST00000623814 1298 ntBASIC16.29■□□□□ 0.2
VCPP55072 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
VCPP55072 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCPP55072 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
VCPP55072 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCPP55072 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VCPP55072 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCPP55072 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
VCPP55072 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCPP55072 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCPP55072 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VCPP55072 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCPP55072 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms