Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC24.65■■□□□ 1.54
CUX1P39880 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
CUX1P39880 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CUX1P39880 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CUX1P39880 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CUX1P39880 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC24.65■■□□□ 1.54
CUX1P39880 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CUX1P39880 KRT17P5-201ENST00000332088 839 ntBASIC24.65■■□□□ 1.54
CUX1P39880 AC092638.2-201ENST00000441105 947 ntBASIC24.65■■□□□ 1.54
CUX1P39880 KRT8P1-201ENST00000557533 1207 ntBASIC24.65■■□□□ 1.54
CUX1P39880 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC24.65■■□□□ 1.54
CUX1P39880 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC24.65■■□□□ 1.54
CUX1P39880 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC24.65■■□□□ 1.54
CUX1P39880 FO393412.1-201ENST00000619841 382 ntBASIC24.65■■□□□ 1.54
CUX1P39880 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CUX1P39880 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
CUX1P39880 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CUX1P39880 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CUX1P39880 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CUX1P39880 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
CUX1P39880 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC24.64■■□□□ 1.54
CUX1P39880 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
CUX1P39880 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC24.64■■□□□ 1.54
CUX1P39880 MRPL37P1-201ENST00000592451 1337 ntBASIC24.64■■□□□ 1.54
CUX1P39880 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
CUX1P39880 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC24.64■■□□□ 1.54
CUX1P39880 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC24.64■■□□□ 1.53
CUX1P39880 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
CUX1P39880 RNA5SP417-201ENST00000516459 108 ntBASIC24.64■■□□□ 1.53
CUX1P39880 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC24.64■■□□□ 1.53
CUX1P39880 AL118516.1-201ENST00000564152 670 ntBASIC24.64■■□□□ 1.53
CUX1P39880 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC24.64■■□□□ 1.53
CUX1P39880 AC124068.2-201ENST00000569473 1109 ntBASIC24.64■■□□□ 1.53
CUX1P39880 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC24.64■■□□□ 1.53
CUX1P39880 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC24.64■■□□□ 1.53
CUX1P39880 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC24.64■■□□□ 1.53
CUX1P39880 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
CUX1P39880 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.53
CUX1P39880 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC24.64■■□□□ 1.53
CUX1P39880 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC24.64■■□□□ 1.53
CUX1P39880 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.53
CUX1P39880 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC24.64■■□□□ 1.53
CUX1P39880 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC24.64■■□□□ 1.53
CUX1P39880 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CUX1P39880 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CUX1P39880 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CUX1P39880 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CUX1P39880 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
CUX1P39880 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC24.63■■□□□ 1.53
CUX1P39880 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC24.63■■□□□ 1.53
CUX1P39880 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC24.63■■□□□ 1.53
CUX1P39880 AC093909.3-201ENST00000504783 336 ntBASIC24.63■■□□□ 1.53
CUX1P39880 NSD1-211ENST00000511258 809 ntTSL 3 BASIC24.63■■□□□ 1.53
CUX1P39880 AC138701.2-201ENST00000553634 226 ntBASIC24.63■■□□□ 1.53
CUX1P39880 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC24.63■■□□□ 1.53
CUX1P39880 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC24.63■■□□□ 1.53
CUX1P39880 DBP-202ENST00000593500 712 ntTSL 2 BASIC24.63■■□□□ 1.53
CUX1P39880 AC012073.1-201ENST00000606114 1108 ntBASIC24.63■■□□□ 1.53
CUX1P39880 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC24.63■■□□□ 1.53
CUX1P39880 AC139712.1-201ENST00000378256 1875 ntBASIC24.63■■□□□ 1.53
CUX1P39880 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CUX1P39880 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CUX1P39880 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CUX1P39880 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CUX1P39880 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC24.62■■□□□ 1.53
CUX1P39880 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC24.62■■□□□ 1.53
CUX1P39880 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CUX1P39880 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CUX1P39880 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC24.62■■□□□ 1.53
CUX1P39880 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CUX1P39880 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
CUX1P39880 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC24.62■■□□□ 1.53
CUX1P39880 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC24.62■■□□□ 1.53
CUX1P39880 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC24.62■■□□□ 1.53
CUX1P39880 RN7SKP109-201ENST00000410592 316 ntBASIC24.62■■□□□ 1.53
CUX1P39880 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC24.62■■□□□ 1.53
CUX1P39880 ALG1L13P-202ENST00000519320 584 ntBASIC24.62■■□□□ 1.53
CUX1P39880 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC24.62■■□□□ 1.53
CUX1P39880 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC24.62■■□□□ 1.53
CUX1P39880 ELP5-212ENST00000574255 671 ntTSL 2 BASIC24.62■■□□□ 1.53
CUX1P39880 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC24.62■■□□□ 1.53
CUX1P39880 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
CUX1P39880 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC24.62■■□□□ 1.53
CUX1P39880 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC24.62■■□□□ 1.53
CUX1P39880 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CUX1P39880 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC24.62■■□□□ 1.53
CUX1P39880 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CUX1P39880 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
CUX1P39880 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC24.62■■□□□ 1.53
CUX1P39880 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC24.62■■□□□ 1.53
CUX1P39880 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
CUX1P39880 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CUX1P39880 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC24.62■■□□□ 1.53
CUX1P39880 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CUX1P39880 AL118508.1-201ENST00000613502 2345 ntBASIC24.62■■□□□ 1.53
CUX1P39880 AC092135.3-201ENST00000624151 1846 ntBASIC24.61■■□□□ 1.53
CUX1P39880 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CUX1P39880 GAS5-209ENST00000430245 723 ntTSL 3 BASIC24.61■■□□□ 1.53
CUX1P39880 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC24.61■■□□□ 1.53
CUX1P39880 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC24.61■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 73.6 ms