Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
HLA-DOAP06340 SMS-201ENST00000379404 1174 ntTSL 3 BASIC17.78■□□□□ 0.44
HLA-DOAP06340 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
HLA-DOAP06340 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC17.78■□□□□ 0.44
HLA-DOAP06340 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC17.78■□□□□ 0.44
HLA-DOAP06340 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC17.78■□□□□ 0.44
HLA-DOAP06340 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HLA-DOAP06340 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HLA-DOAP06340 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HLA-DOAP06340 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
HLA-DOAP06340 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HLA-DOAP06340 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
HLA-DOAP06340 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HLA-DOAP06340 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HLA-DOAP06340 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HLA-DOAP06340 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
HLA-DOAP06340 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HLA-DOAP06340 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HLA-DOAP06340 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HLA-DOAP06340 SSR4P1-203ENST00000599569 2260 ntBASIC17.78■□□□□ 0.44
HLA-DOAP06340 KRT8P29-201ENST00000420409 1371 ntBASIC17.78■□□□□ 0.44
HLA-DOAP06340 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC17.78■□□□□ 0.44
HLA-DOAP06340 WASH3P-207ENST00000560956 1394 ntBASIC17.78■□□□□ 0.44
HLA-DOAP06340 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HLA-DOAP06340 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC17.78■□□□□ 0.44
HLA-DOAP06340 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
HLA-DOAP06340 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HLA-DOAP06340 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
HLA-DOAP06340 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HLA-DOAP06340 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC17.77■□□□□ 0.44
HLA-DOAP06340 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
HLA-DOAP06340 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HLA-DOAP06340 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
HLA-DOAP06340 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC17.77■□□□□ 0.44
HLA-DOAP06340 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HLA-DOAP06340 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC17.77■□□□□ 0.44
HLA-DOAP06340 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC17.77■□□□□ 0.44
HLA-DOAP06340 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
HLA-DOAP06340 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
HLA-DOAP06340 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
HLA-DOAP06340 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.44
HLA-DOAP06340 SERF2-209ENST00000409646 559 ntTSL 4 BASIC17.77■□□□□ 0.44
HLA-DOAP06340 EIF4HP1-201ENST00000453115 687 ntBASIC17.77■□□□□ 0.44
HLA-DOAP06340 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HLA-DOAP06340 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC17.77■□□□□ 0.44
HLA-DOAP06340 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC17.77■□□□□ 0.44
HLA-DOAP06340 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC17.77■□□□□ 0.44
HLA-DOAP06340 AC138649.2-201ENST00000615886 705 ntBASIC17.77■□□□□ 0.44
HLA-DOAP06340 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC17.77■□□□□ 0.44
HLA-DOAP06340 AC068587.10-201ENST00000641210 219 ntBASIC17.77■□□□□ 0.44
HLA-DOAP06340 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC17.77■□□□□ 0.44
HLA-DOAP06340 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HLA-DOAP06340 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC17.77■□□□□ 0.44
HLA-DOAP06340 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
HLA-DOAP06340 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
HLA-DOAP06340 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
HLA-DOAP06340 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
HLA-DOAP06340 INE2-201ENST00000630399 1874 ntBASIC17.77■□□□□ 0.43
HLA-DOAP06340 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HLA-DOAP06340 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HLA-DOAP06340 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HLA-DOAP06340 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
HLA-DOAP06340 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC17.77■□□□□ 0.43
HLA-DOAP06340 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
HLA-DOAP06340 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HLA-DOAP06340 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HLA-DOAP06340 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC17.77■□□□□ 0.43
HLA-DOAP06340 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
HLA-DOAP06340 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.76■□□□□ 0.43
HLA-DOAP06340 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HLA-DOAP06340 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HLA-DOAP06340 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC17.76■□□□□ 0.43
HLA-DOAP06340 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HLA-DOAP06340 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HLA-DOAP06340 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC17.76■□□□□ 0.43
HLA-DOAP06340 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
HLA-DOAP06340 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HLA-DOAP06340 MROH4P-201ENST00000431302 1578 ntBASIC17.76■□□□□ 0.43
HLA-DOAP06340 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC17.76■□□□□ 0.43
HLA-DOAP06340 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HLA-DOAP06340 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC17.76■□□□□ 0.43
HLA-DOAP06340 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HLA-DOAP06340 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HLA-DOAP06340 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HLA-DOAP06340 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
HLA-DOAP06340 SLC25A24P2-201ENST00000415059 510 ntBASIC17.76■□□□□ 0.43
HLA-DOAP06340 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC17.76■□□□□ 0.43
HLA-DOAP06340 AC044849.1-201ENST00000519737 1188 ntBASIC17.76■□□□□ 0.43
HLA-DOAP06340 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC17.76■□□□□ 0.43
HLA-DOAP06340 ACTG1P17-201ENST00000558391 1119 ntBASIC17.76■□□□□ 0.43
HLA-DOAP06340 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC17.76■□□□□ 0.43
HLA-DOAP06340 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HLA-DOAP06340 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
HLA-DOAP06340 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
HLA-DOAP06340 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC17.76■□□□□ 0.43
HLA-DOAP06340 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
HLA-DOAP06340 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HLA-DOAP06340 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HLA-DOAP06340 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
HLA-DOAP06340 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms