Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP4O75161 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP4O75161 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP4O75161 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC20.73■□□□□ 0.91
NPHP4O75161 KRT8P28-201ENST00000433288 1390 ntBASIC20.73■□□□□ 0.91
NPHP4O75161 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP4O75161 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC20.73■□□□□ 0.91
NPHP4O75161 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC20.73■□□□□ 0.91
NPHP4O75161 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
NPHP4O75161 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP4O75161 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC20.73■□□□□ 0.91
NPHP4O75161 NME6-208ENST00000435684 599 ntTSL 2 BASIC20.73■□□□□ 0.91
NPHP4O75161 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC20.73■□□□□ 0.91
NPHP4O75161 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC20.73■□□□□ 0.91
NPHP4O75161 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP4O75161 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC20.73■□□□□ 0.91
NPHP4O75161 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC20.73■□□□□ 0.91
NPHP4O75161 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC20.73■□□□□ 0.91
NPHP4O75161 ST5-261ENST00000626808 1071 ntTSL 5 BASIC20.73■□□□□ 0.91
NPHP4O75161 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC20.73■□□□□ 0.91
NPHP4O75161 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC20.73■□□□□ 0.91
NPHP4O75161 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP4O75161 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC20.73■□□□□ 0.91
NPHP4O75161 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC20.73■□□□□ 0.91
NPHP4O75161 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC20.73■□□□□ 0.91
NPHP4O75161 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC20.73■□□□□ 0.91
NPHP4O75161 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP4O75161 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP4O75161 TEKT4P2-202ENST00000559466 1312 ntBASIC20.72■□□□□ 0.91
NPHP4O75161 AL590440.2-201ENST00000641973 1595 ntBASIC20.72■□□□□ 0.91
NPHP4O75161 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP4O75161 CTSL-202ENST00000342020 933 ntTSL 2 BASIC20.72■□□□□ 0.91
NPHP4O75161 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC20.72■□□□□ 0.91
NPHP4O75161 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC20.72■□□□□ 0.91
NPHP4O75161 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC20.72■□□□□ 0.91
NPHP4O75161 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
NPHP4O75161 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC20.72■□□□□ 0.91
NPHP4O75161 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC20.72■□□□□ 0.91
NPHP4O75161 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP4O75161 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC20.72■□□□□ 0.91
NPHP4O75161 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC20.72■□□□□ 0.91
NPHP4O75161 TRMT112P3-201ENST00000580149 358 ntBASIC20.72■□□□□ 0.91
NPHP4O75161 AC008972.2-201ENST00000606587 494 ntBASIC20.72■□□□□ 0.91
NPHP4O75161 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP4O75161 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
NPHP4O75161 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP4O75161 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
NPHP4O75161 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
NPHP4O75161 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
NPHP4O75161 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP4O75161 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC20.72■□□□□ 0.91
NPHP4O75161 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC20.71■□□□□ 0.91
NPHP4O75161 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP4O75161 AC092364.2-201ENST00000596710 2692 ntBASIC20.71■□□□□ 0.91
NPHP4O75161 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP4O75161 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
NPHP4O75161 JTB-202ENST00000356648 1040 ntTSL 2 BASIC20.71■□□□□ 0.91
NPHP4O75161 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP4O75161 AF274858.1-201ENST00000406288 372 ntBASIC20.71■□□□□ 0.91
NPHP4O75161 AL929302.1-201ENST00000426556 871 ntBASIC20.71■□□□□ 0.91
NPHP4O75161 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP4O75161 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC20.71■□□□□ 0.91
NPHP4O75161 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC20.71■□□□□ 0.91
NPHP4O75161 OR2A1-AS1-210ENST00000496968 531 ntBASIC20.71■□□□□ 0.91
NPHP4O75161 CD164-210ENST00000512821 964 ntTSL 2 BASIC20.71■□□□□ 0.91
NPHP4O75161 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC20.71■□□□□ 0.91
NPHP4O75161 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC20.71■□□□□ 0.91
NPHP4O75161 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC20.71■□□□□ 0.91
NPHP4O75161 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP4O75161 NAV1-210ENST00000593583 726 ntBASIC20.71■□□□□ 0.91
NPHP4O75161 LINC00244-201ENST00000625073 613 ntBASIC20.71■□□□□ 0.91
NPHP4O75161 HELLS-212ENST00000630929 400 ntTSL 5 BASIC20.71■□□□□ 0.91
NPHP4O75161 AC233280.19-201ENST00000633223 136 ntBASIC20.71■□□□□ 0.91
NPHP4O75161 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
NPHP4O75161 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC20.71■□□□□ 0.91
NPHP4O75161 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
NPHP4O75161 FZD10-202ENST00000539839 3282 ntBASIC20.71■□□□□ 0.91
NPHP4O75161 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP4O75161 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP4O75161 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP4O75161 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC20.71■□□□□ 0.91
NPHP4O75161 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC20.71■□□□□ 0.91
NPHP4O75161 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
NPHP4O75161 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC20.71■□□□□ 0.91
NPHP4O75161 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
NPHP4O75161 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC20.7■□□□□ 0.91
NPHP4O75161 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
NPHP4O75161 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
NPHP4O75161 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP4O75161 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP4O75161 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC20.7■□□□□ 0.9
NPHP4O75161 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
NPHP4O75161 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC20.7■□□□□ 0.9
NPHP4O75161 GOLGA2P7-209ENST00000560408 745 ntBASIC20.7■□□□□ 0.9
NPHP4O75161 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC20.7■□□□□ 0.9
NPHP4O75161 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
NPHP4O75161 DNAJC10-211ENST00000640034 888 ntTSL 5 BASIC20.7■□□□□ 0.9
NPHP4O75161 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP4O75161 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC20.7■□□□□ 0.9
NPHP4O75161 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 92.8 ms