Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AC138749.3-201ENST00000567691 622 ntBASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 AC116165.1-201ENST00000611806 668 ntBASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 MRPS18AP1-201ENST00000414458 589 ntBASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 VDAC1P7-201ENST00000462417 847 ntBASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 AL390955.2-201ENST00000603032 514 ntBASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 RNA5-8SN1-201ENST00000610460 153 ntBASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 RNA5-8SN5-202ENST00000612463 153 ntBASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 RNA5-8SN4-201ENST00000613359 153 ntBASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 RNA5-8SN5-201ENST00000619471 153 ntBASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 OR2I1P-210ENST00000642037 4691 ntBASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
LIMCH1Q9UPQ0 AC015802.1-201ENST00000588104 1449 ntBASIC17.89■□□□□ 0.46
LIMCH1Q9UPQ0 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC17.89■□□□□ 0.46
LIMCH1Q9UPQ0 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
LIMCH1Q9UPQ0 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC17.89■□□□□ 0.46
LIMCH1Q9UPQ0 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.46
LIMCH1Q9UPQ0 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.46
LIMCH1Q9UPQ0 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 DOC2GP-202ENST00000514950 1163 ntBASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 TPRX2P-201ENST00000535362 881 ntBASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 AC093512.1-201ENST00000617969 520 ntBASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMCH1Q9UPQ0 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms