Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 ABBA01031660.1-201ENST00000635219 756 ntBASIC11.77□□□□□ -0.53
CCDC140Q96MF4 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 ANKRD26P3-201ENST00000454044 2748 ntBASIC11.77□□□□□ -0.53
CCDC140Q96MF4 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
CCDC140Q96MF4 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 RPS15-201ENST00000233609 534 ntTSL 2 BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 ACTBP8-201ENST00000403258 1108 ntBASIC11.76□□□□□ -0.53
CCDC140Q96MF4 LSM5-207ENST00000410044 687 ntTSL 3 BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 AP006294.1-201ENST00000415407 339 ntBASIC11.76□□□□□ -0.53
CCDC140Q96MF4 AC114812.1-204ENST00000449669 728 ntBASIC11.76□□□□□ -0.53
CCDC140Q96MF4 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 RPS15-205ENST00000586686 562 ntTSL 5 BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 RPS15-208ENST00000591804 711 ntTSL 5 BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 RPSAP52-203ENST00000622976 1023 ntBASIC11.76□□□□□ -0.53
CCDC140Q96MF4 AC023090.2-201ENST00000625182 2110 ntBASIC11.76□□□□□ -0.53
CCDC140Q96MF4 AC025048.6-201ENST00000634326 1161 ntBASIC11.76□□□□□ -0.53
CCDC140Q96MF4 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CCDC140Q96MF4 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 AC018529.2-202ENST00000611482 3087 ntBASIC11.75□□□□□ -0.53
CCDC140Q96MF4 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CCDC140Q96MF4 ACKR1-201ENST00000368121 1240 ntBASIC11.75□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms