Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 MROH4P-201ENST00000431302 1578 ntBASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 MIR1233-2-201ENST00000408138 82 ntBASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 MIR1233-1-201ENST00000408722 82 ntBASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 RPL13P2-201ENST00000440687 659 ntBASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 AC004449.1-201ENST00000564240 433 ntBASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 AL691403.2-201ENST00000618460 490 ntBASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 DGCR9-201ENST00000609630 2415 ntBASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 ZBED1P1-201ENST00000502364 1930 ntBASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 WRB-204ENST00000398753 699 ntTSL 3 BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 CENPM-205ENST00000404067 905 ntTSL 3 BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 CENPM-206ENST00000407253 818 ntTSL 2 BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 CNN2P2-201ENST00000443536 909 ntBASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 CNN2P3-201ENST00000450201 906 ntBASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 AC010336.2-201ENST00000564226 506 ntBASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 AC051619.7-201ENST00000568314 623 ntBASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 AC015910.1-201ENST00000579400 975 ntBASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 AL136317.3-201ENST00000618497 906 ntBASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC14.34□□□□□ -0.11
CLIP4Q8N3C7 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms