Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC18.19■□□□□ 0.5
CCDC88AQ3V6T2 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC88AQ3V6T2 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC88AQ3V6T2 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC88AQ3V6T2 AC012508.2-201ENST00000567613 1472 ntBASIC18.19■□□□□ 0.5
CCDC88AQ3V6T2 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC88AQ3V6T2 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 AC011247.3-201ENST00000603297 438 ntBASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 AC105137.3-201ENST00000617588 984 ntBASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 MROH4P-201ENST00000431302 1578 ntBASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 ALG1L6P-201ENST00000515248 758 ntBASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 AC138696.2-201ENST00000607376 223 ntBASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 AC006158.1-201ENST00000610661 249 ntBASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 AC148477.9-201ENST00000623974 539 ntBASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC18.18■□□□□ 0.5
CCDC88AQ3V6T2 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CCDC88AQ3V6T2 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC88AQ3V6T2 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC88AQ3V6T2 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC18.17■□□□□ 0.5
CCDC88AQ3V6T2 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC88AQ3V6T2 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CCDC88AQ3V6T2 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC88AQ3V6T2 AL807761.2-201ENST00000422849 729 ntBASIC18.17■□□□□ 0.5
CCDC88AQ3V6T2 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
CCDC88AQ3V6T2 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
CCDC88AQ3V6T2 LYPLA2P1-203ENST00000447689 696 ntBASIC18.17■□□□□ 0.5
CCDC88AQ3V6T2 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC18.17■□□□□ 0.5
CCDC88AQ3V6T2 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC18.17■□□□□ 0.5
CCDC88AQ3V6T2 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC18.17■□□□□ 0.5
CCDC88AQ3V6T2 AC027139.1-201ENST00000565286 951 ntBASIC18.17■□□□□ 0.5
CCDC88AQ3V6T2 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC88AQ3V6T2 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC88AQ3V6T2 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CCDC88AQ3V6T2 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC18.17■□□□□ 0.5
CCDC88AQ3V6T2 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
CCDC88AQ3V6T2 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC18.17■□□□□ 0.5
CCDC88AQ3V6T2 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC88AQ3V6T2 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC18.17■□□□□ 0.5
CCDC88AQ3V6T2 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.17■□□□□ 0.5
CCDC88AQ3V6T2 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC88AQ3V6T2 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC88AQ3V6T2 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC18.17■□□□□ 0.5
CCDC88AQ3V6T2 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 AC026320.2-201ENST00000434379 478 ntBASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 MIR3180-2-201ENST00000581748 88 ntBASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 FO393412.1-201ENST00000619841 382 ntBASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms