Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SLC9A7P1-201ENST00000554295 3311 ntBASIC14.1□□□□□ -0.15
RNF4P78317 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
RNF4P78317 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
RNF4P78317 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC14.1□□□□□ -0.15
RNF4P78317 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC14.1□□□□□ -0.15
RNF4P78317 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
RNF4P78317 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC14.1□□□□□ -0.15
RNF4P78317 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RNF4P78317 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RNF4P78317 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RNF4P78317 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNF4P78317 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNF4P78317 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNF4P78317 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC14.09□□□□□ -0.15
RNF4P78317 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC14.09□□□□□ -0.15
RNF4P78317 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RNF4P78317 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNF4P78317 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNF4P78317 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RNF4P78317 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNF4P78317 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC14.09□□□□□ -0.15
RNF4P78317 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.09□□□□□ -0.15
RNF4P78317 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
RNF4P78317 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNF4P78317 GUK1-206ENST00000366723 845 ntTSL 5 BASIC14.09□□□□□ -0.15
RNF4P78317 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNF4P78317 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
RNF4P78317 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC14.09□□□□□ -0.15
RNF4P78317 USB1-202ENST00000423271 1217 ntTSL 2 BASIC14.09□□□□□ -0.15
RNF4P78317 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC14.09□□□□□ -0.15
RNF4P78317 EIF3FP3-201ENST00000434851 1086 ntBASIC14.09□□□□□ -0.15
RNF4P78317 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC14.09□□□□□ -0.15
RNF4P78317 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC14.09□□□□□ -0.15
RNF4P78317 AC022210.1-201ENST00000449856 793 ntBASIC14.09□□□□□ -0.15
RNF4P78317 KLF2P4-201ENST00000451959 1225 ntBASIC14.09□□□□□ -0.15
RNF4P78317 CTBP2P5-201ENST00000454986 1264 ntBASIC14.09□□□□□ -0.15
RNF4P78317 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC14.09□□□□□ -0.15
RNF4P78317 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC14.09□□□□□ -0.15
RNF4P78317 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC14.09□□□□□ -0.15
RNF4P78317 RPL28-206ENST00000558752 671 ntTSL 3 BASIC14.09□□□□□ -0.15
RNF4P78317 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC14.09□□□□□ -0.15
RNF4P78317 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC14.09□□□□□ -0.15
RNF4P78317 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC14.09□□□□□ -0.15
RNF4P78317 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
RNF4P78317 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC14.09□□□□□ -0.15
RNF4P78317 MIR6805-201ENST00000615055 62 ntBASIC14.09□□□□□ -0.15
RNF4P78317 MIR6775-201ENST00000617557 69 ntBASIC14.09□□□□□ -0.15
RNF4P78317 AC012183.1-201ENST00000625197 499 ntBASIC14.09□□□□□ -0.15
RNF4P78317 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC14.09□□□□□ -0.15
RNF4P78317 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RNF4P78317 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RNF4P78317 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC14.09□□□□□ -0.15
RNF4P78317 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC14.09□□□□□ -0.15
RNF4P78317 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNF4P78317 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNF4P78317 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNF4P78317 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNF4P78317 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC14.09□□□□□ -0.15
RNF4P78317 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
RNF4P78317 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RNF4P78317 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC14.09□□□□□ -0.15
RNF4P78317 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RNF4P78317 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RNF4P78317 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
RNF4P78317 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RNF4P78317 AC006486.2-201ENST00000624246 2199 ntBASIC14.09□□□□□ -0.15
RNF4P78317 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14.09□□□□□ -0.15
RNF4P78317 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RNF4P78317 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC14.09□□□□□ -0.15
RNF4P78317 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNF4P78317 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNF4P78317 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNF4P78317 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
RNF4P78317 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC14.09□□□□□ -0.15
RNF4P78317 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.15
RNF4P78317 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
RNF4P78317 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
RNF4P78317 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
RNF4P78317 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
RNF4P78317 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC14.08□□□□□ -0.15
RNF4P78317 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
RNF4P78317 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.08□□□□□ -0.16
RNF4P78317 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
RNF4P78317 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RNF4P78317 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC14.08□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms