Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLCN3P51790 AC020910.5-201ENST00000623668 1865 ntBASIC16.62■□□□□ 0.25
CLCN3P51790 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLCN3P51790 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLCN3P51790 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC16.62■□□□□ 0.25
CLCN3P51790 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLCN3P51790 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLCN3P51790 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CLCN3P51790 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.62■□□□□ 0.25
CLCN3P51790 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLCN3P51790 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLCN3P51790 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLCN3P51790 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
CLCN3P51790 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.62■□□□□ 0.25
CLCN3P51790 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
CLCN3P51790 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CLCN3P51790 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
CLCN3P51790 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLCN3P51790 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC16.61■□□□□ 0.25
CLCN3P51790 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLCN3P51790 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLCN3P51790 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLCN3P51790 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
CLCN3P51790 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
CLCN3P51790 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLCN3P51790 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC16.61■□□□□ 0.25
CLCN3P51790 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLCN3P51790 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC16.61■□□□□ 0.25
CLCN3P51790 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLCN3P51790 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC16.61■□□□□ 0.25
CLCN3P51790 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLCN3P51790 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.61■□□□□ 0.25
CLCN3P51790 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLCN3P51790 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLCN3P51790 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLCN3P51790 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.61■□□□□ 0.25
CLCN3P51790 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLCN3P51790 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLCN3P51790 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLCN3P51790 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
CLCN3P51790 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC16.61■□□□□ 0.25
CLCN3P51790 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
CLCN3P51790 AC100850.1-201ENST00000506768 649 ntBASIC16.61■□□□□ 0.25
CLCN3P51790 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC16.61■□□□□ 0.25
CLCN3P51790 AP001258.2-201ENST00000529891 490 ntBASIC16.61■□□□□ 0.25
CLCN3P51790 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC16.61■□□□□ 0.25
CLCN3P51790 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC16.61■□□□□ 0.25
CLCN3P51790 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC16.61■□□□□ 0.25
CLCN3P51790 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
CLCN3P51790 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLCN3P51790 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLCN3P51790 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLCN3P51790 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLCN3P51790 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLCN3P51790 AC105917.1-201ENST00000506637 2539 ntBASIC16.61■□□□□ 0.25
CLCN3P51790 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.61■□□□□ 0.25
CLCN3P51790 AP000593.2-201ENST00000542775 1433 ntBASIC16.61■□□□□ 0.25
CLCN3P51790 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLCN3P51790 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC16.61■□□□□ 0.25
CLCN3P51790 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLCN3P51790 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.61■□□□□ 0.25
CLCN3P51790 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLCN3P51790 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLCN3P51790 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CLCN3P51790 AC138035.3-201ENST00000622706 2791 ntBASIC16.6■□□□□ 0.25
CLCN3P51790 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
CLCN3P51790 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
CLCN3P51790 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.6■□□□□ 0.25
CLCN3P51790 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC16.6■□□□□ 0.25
CLCN3P51790 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLCN3P51790 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CLCN3P51790 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.6■□□□□ 0.25
CLCN3P51790 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLCN3P51790 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLCN3P51790 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLCN3P51790 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.6■□□□□ 0.25
CLCN3P51790 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLCN3P51790 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLCN3P51790 AGER-203ENST00000375065 665 ntTSL 2 BASIC16.6■□□□□ 0.25
CLCN3P51790 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLCN3P51790 RN7SKP175-201ENST00000408472 289 ntBASIC16.6■□□□□ 0.25
CLCN3P51790 NME6-203ENST00000415644 849 ntTSL 2 BASIC16.6■□□□□ 0.25
CLCN3P51790 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CLCN3P51790 KRT8P13-201ENST00000463294 1010 ntBASIC16.6■□□□□ 0.25
CLCN3P51790 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC16.6■□□□□ 0.25
CLCN3P51790 AC005730.2-201ENST00000564549 1184 ntBASIC16.6■□□□□ 0.25
CLCN3P51790 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC16.6■□□□□ 0.25
CLCN3P51790 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC16.6■□□□□ 0.25
CLCN3P51790 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC16.6■□□□□ 0.25
CLCN3P51790 AC103810.3-201ENST00000583567 96 ntBASIC16.6■□□□□ 0.25
CLCN3P51790 AC138696.2-201ENST00000607376 223 ntBASIC16.6■□□□□ 0.25
CLCN3P51790 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC16.6■□□□□ 0.25
CLCN3P51790 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLCN3P51790 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.6■□□□□ 0.25
CLCN3P51790 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
CLCN3P51790 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLCN3P51790 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLCN3P51790 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
CLCN3P51790 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
CLCN3P51790 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms