Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LIG3P49916 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC16.11■□□□□ 0.17
LIG3P49916 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC16.11■□□□□ 0.17
LIG3P49916 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC16.11■□□□□ 0.17
LIG3P49916 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LIG3P49916 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LIG3P49916 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
LIG3P49916 RAC2-204ENST00000406508 893 ntTSL 5 BASIC16.11■□□□□ 0.17
LIG3P49916 CENPM-206ENST00000407253 818 ntTSL 2 BASIC16.11■□□□□ 0.17
LIG3P49916 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC16.11■□□□□ 0.17
LIG3P49916 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC16.11■□□□□ 0.17
LIG3P49916 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.11■□□□□ 0.17
LIG3P49916 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LIG3P49916 AC245100.5-201ENST00000452108 331 ntBASIC16.11■□□□□ 0.17
LIG3P49916 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LIG3P49916 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC16.11■□□□□ 0.17
LIG3P49916 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16.11■□□□□ 0.17
LIG3P49916 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LIG3P49916 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16.11■□□□□ 0.17
LIG3P49916 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.11■□□□□ 0.17
LIG3P49916 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
LIG3P49916 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
LIG3P49916 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LIG3P49916 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
LIG3P49916 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC16.11■□□□□ 0.17
LIG3P49916 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC16.11■□□□□ 0.17
LIG3P49916 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
LIG3P49916 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
LIG3P49916 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
LIG3P49916 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
LIG3P49916 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LIG3P49916 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LIG3P49916 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC16.11■□□□□ 0.17
LIG3P49916 KRT8P12-202ENST00000472924 1397 ntBASIC16.11■□□□□ 0.17
LIG3P49916 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LIG3P49916 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
LIG3P49916 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LIG3P49916 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC16.11■□□□□ 0.17
LIG3P49916 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LIG3P49916 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LIG3P49916 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LIG3P49916 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LIG3P49916 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC16.11■□□□□ 0.17
LIG3P49916 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
LIG3P49916 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC16.1■□□□□ 0.17
LIG3P49916 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LIG3P49916 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LIG3P49916 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LIG3P49916 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LIG3P49916 CYP4F24P-201ENST00000586049 1580 ntBASIC16.1■□□□□ 0.17
LIG3P49916 AC022144.1-201ENST00000602255 1580 ntBASIC16.1■□□□□ 0.17
LIG3P49916 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
LIG3P49916 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LIG3P49916 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC16.1■□□□□ 0.17
LIG3P49916 MRPS18AP1-201ENST00000414458 589 ntBASIC16.1■□□□□ 0.17
LIG3P49916 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC16.1■□□□□ 0.17
LIG3P49916 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
LIG3P49916 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.1■□□□□ 0.17
LIG3P49916 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LIG3P49916 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.1■□□□□ 0.17
LIG3P49916 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC16.1■□□□□ 0.17
LIG3P49916 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC16.1■□□□□ 0.17
LIG3P49916 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.1■□□□□ 0.17
LIG3P49916 AL844908.2-201ENST00000609461 460 ntBASIC16.1■□□□□ 0.17
LIG3P49916 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC16.1■□□□□ 0.17
LIG3P49916 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
LIG3P49916 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LIG3P49916 USP31-203ENST00000567975 2142 ntTSL 2 BASIC16.1■□□□□ 0.17
LIG3P49916 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
LIG3P49916 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC16.1■□□□□ 0.17
LIG3P49916 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16.1■□□□□ 0.17
LIG3P49916 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LIG3P49916 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.1■□□□□ 0.17
LIG3P49916 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LIG3P49916 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
LIG3P49916 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LIG3P49916 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC16.1■□□□□ 0.17
LIG3P49916 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LIG3P49916 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LIG3P49916 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LIG3P49916 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LIG3P49916 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LIG3P49916 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC16.1■□□□□ 0.17
LIG3P49916 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC16.1■□□□□ 0.17
LIG3P49916 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
LIG3P49916 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LIG3P49916 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LIG3P49916 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC16.09■□□□□ 0.17
LIG3P49916 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LIG3P49916 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LIG3P49916 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC16.09■□□□□ 0.17
LIG3P49916 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
LIG3P49916 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LIG3P49916 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
LIG3P49916 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LIG3P49916 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC16.09■□□□□ 0.17
LIG3P49916 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC16.09■□□□□ 0.17
LIG3P49916 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC16.09■□□□□ 0.17
LIG3P49916 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LIG3P49916 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms