Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 SPDYE17-201ENST00000412399 783 ntBASIC12.54□□□□□ -0.4
CDX1P47902 RPL37AP1-201ENST00000412502 279 ntBASIC12.54□□□□□ -0.4
CDX1P47902 FAM207CP-201ENST00000443486 507 ntBASIC12.54□□□□□ -0.4
CDX1P47902 TSPY16P-201ENST00000449843 468 ntBASIC12.54□□□□□ -0.4
CDX1P47902 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC12.54□□□□□ -0.4
CDX1P47902 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
CDX1P47902 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC12.54□□□□□ -0.4
CDX1P47902 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC12.54□□□□□ -0.4
CDX1P47902 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC12.54□□□□□ -0.4
CDX1P47902 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 TEX28P1-201ENST00000613479 1221 ntBASIC12.54□□□□□ -0.4
CDX1P47902 TEX28P2-201ENST00000617764 1221 ntBASIC12.54□□□□□ -0.4
CDX1P47902 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC12.54□□□□□ -0.4
CDX1P47902 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC12.54□□□□□ -0.4
CDX1P47902 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
CDX1P47902 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC12.54□□□□□ -0.4
CDX1P47902 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
CDX1P47902 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
CDX1P47902 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC12.54□□□□□ -0.4
CDX1P47902 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC12.54□□□□□ -0.4
CDX1P47902 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC12.54□□□□□ -0.4
CDX1P47902 PPT1-213ENST00000641319 2388 ntBASIC12.54□□□□□ -0.4
CDX1P47902 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 GABPB1-201ENST00000220429 2726 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
CDX1P47902 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
CDX1P47902 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
CDX1P47902 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC12.53□□□□□ -0.4
CDX1P47902 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC12.53□□□□□ -0.4
CDX1P47902 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 SMTN-201ENST00000333137 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC12.53□□□□□ -0.4
CDX1P47902 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC12.53□□□□□ -0.4
CDX1P47902 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
CDX1P47902 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC12.53□□□□□ -0.4
CDX1P47902 TSSK5P-201ENST00000423978 907 ntBASIC12.53□□□□□ -0.4
CDX1P47902 SERBP1P3-201ENST00000459980 809 ntBASIC12.53□□□□□ -0.4
CDX1P47902 CCDC74BP1-201ENST00000508880 1123 ntBASIC12.53□□□□□ -0.4
CDX1P47902 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC12.53□□□□□ -0.4
CDX1P47902 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC12.53□□□□□ -0.4
CDX1P47902 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
CDX1P47902 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC12.53□□□□□ -0.4
CDX1P47902 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
CDX1P47902 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC12.53□□□□□ -0.4
CDX1P47902 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
CDX1P47902 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC12.53□□□□□ -0.4
CDX1P47902 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
CDX1P47902 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
CDX1P47902 AL359881.3-201ENST00000602640 1721 ntBASIC12.53□□□□□ -0.4
CDX1P47902 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
CDX1P47902 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
CDX1P47902 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
CDX1P47902 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC12.53□□□□□ -0.4
CDX1P47902 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC12.53□□□□□ -0.4
CDX1P47902 KRT8P12-202ENST00000472924 1397 ntBASIC12.53□□□□□ -0.4
CDX1P47902 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC12.53□□□□□ -0.4
CDX1P47902 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
CDX1P47902 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CDX1P47902 DLX3-201ENST00000434704 2602 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms