Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC19.41■□□□□ 0.7
COL18A1P39060 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL18A1P39060 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL18A1P39060 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC19.41■□□□□ 0.7
COL18A1P39060 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC19.41■□□□□ 0.7
COL18A1P39060 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC19.41■□□□□ 0.7
COL18A1P39060 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL18A1P39060 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC19.41■□□□□ 0.7
COL18A1P39060 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL18A1P39060 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC19.41■□□□□ 0.7
COL18A1P39060 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC19.41■□□□□ 0.7
COL18A1P39060 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC19.41■□□□□ 0.7
COL18A1P39060 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC19.41■□□□□ 0.7
COL18A1P39060 AC006158.1-201ENST00000610661 249 ntBASIC19.41■□□□□ 0.7
COL18A1P39060 AC244250.3-201ENST00000620749 366 ntBASIC19.41■□□□□ 0.7
COL18A1P39060 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC19.41■□□□□ 0.7
COL18A1P39060 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC19.41■□□□□ 0.7
COL18A1P39060 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL18A1P39060 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL18A1P39060 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL18A1P39060 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
COL18A1P39060 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
COL18A1P39060 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
COL18A1P39060 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC19.4■□□□□ 0.7
COL18A1P39060 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL18A1P39060 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL18A1P39060 USP4-203ENST00000415188 1454 ntTSL 3 BASIC19.4■□□□□ 0.7
COL18A1P39060 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL18A1P39060 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL18A1P39060 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
COL18A1P39060 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL18A1P39060 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC19.4■□□□□ 0.7
COL18A1P39060 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC19.4■□□□□ 0.7
COL18A1P39060 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
COL18A1P39060 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC19.4■□□□□ 0.7
COL18A1P39060 DBP-202ENST00000593500 712 ntTSL 2 BASIC19.4■□□□□ 0.7
COL18A1P39060 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC19.4■□□□□ 0.7
COL18A1P39060 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL18A1P39060 AC002044.2-201ENST00000624910 970 ntBASIC19.4■□□□□ 0.7
COL18A1P39060 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL18A1P39060 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC19.4■□□□□ 0.7
COL18A1P39060 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL18A1P39060 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC19.4■□□□□ 0.7
COL18A1P39060 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL18A1P39060 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL18A1P39060 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
COL18A1P39060 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC19.4■□□□□ 0.7
COL18A1P39060 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL18A1P39060 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
COL18A1P39060 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL18A1P39060 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL18A1P39060 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
COL18A1P39060 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
COL18A1P39060 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC19.39■□□□□ 0.7
COL18A1P39060 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.7
COL18A1P39060 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
COL18A1P39060 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
COL18A1P39060 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
COL18A1P39060 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
COL18A1P39060 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC19.39■□□□□ 0.7
COL18A1P39060 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
COL18A1P39060 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL18A1P39060 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL18A1P39060 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL18A1P39060 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
COL18A1P39060 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL18A1P39060 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL18A1P39060 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL18A1P39060 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
COL18A1P39060 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL18A1P39060 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL18A1P39060 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL18A1P39060 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL18A1P39060 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC19.39■□□□□ 0.69
COL18A1P39060 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL18A1P39060 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL18A1P39060 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL18A1P39060 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC19.39■□□□□ 0.69
COL18A1P39060 ERP29P1-201ENST00000442902 706 ntBASIC19.39■□□□□ 0.69
COL18A1P39060 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC19.39■□□□□ 0.69
COL18A1P39060 NSD1-211ENST00000511258 809 ntTSL 3 BASIC19.39■□□□□ 0.69
COL18A1P39060 NAA40-205ENST00000539656 577 ntTSL 4 BASIC19.39■□□□□ 0.69
COL18A1P39060 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC19.39■□□□□ 0.69
COL18A1P39060 RN7SL470P-201ENST00000583069 259 ntBASIC19.39■□□□□ 0.69
COL18A1P39060 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
COL18A1P39060 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC19.39■□□□□ 0.69
COL18A1P39060 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC19.39■□□□□ 0.69
COL18A1P39060 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC19.39■□□□□ 0.69
COL18A1P39060 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL18A1P39060 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL18A1P39060 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC19.39■□□□□ 0.69
COL18A1P39060 AC026471.1-201ENST00000564629 3026 ntBASIC19.39■□□□□ 0.69
COL18A1P39060 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL18A1P39060 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
COL18A1P39060 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC19.38■□□□□ 0.69
COL18A1P39060 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
COL18A1P39060 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL18A1P39060 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL18A1P39060 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC19.38■□□□□ 0.69
COL18A1P39060 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms