Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 PSMC1P2-201ENST00000423961 1204 ntBASIC15.5■□□□□ 0.07
COL9A1P20849 AQP7P5-201ENST00000428759 1049 ntBASIC15.5■□□□□ 0.07
COL9A1P20849 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC15.5■□□□□ 0.07
COL9A1P20849 AC002127.2-201ENST00000444032 792 ntTSL 3 BASIC15.5■□□□□ 0.07
COL9A1P20849 AQP7P4-201ENST00000447083 1042 ntBASIC15.5■□□□□ 0.07
COL9A1P20849 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL9A1P20849 AQP7P2-201ENST00000453967 1041 ntBASIC15.5■□□□□ 0.07
COL9A1P20849 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL9A1P20849 AC087071.1-201ENST00000469264 427 ntTSL 2 BASIC15.5■□□□□ 0.07
COL9A1P20849 WNT5A-205ENST00000497027 1299 ntTSL 2 BASIC15.5■□□□□ 0.07
COL9A1P20849 AC124242.1-203ENST00000517747 817 ntTSL 3 BASIC15.5■□□□□ 0.07
COL9A1P20849 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC15.5■□□□□ 0.07
COL9A1P20849 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC15.5■□□□□ 0.07
COL9A1P20849 ABHD17AP9-201ENST00000561925 548 ntBASIC15.5■□□□□ 0.07
COL9A1P20849 PAM16-211ENST00000575848 518 ntTSL 3 BASIC15.5■□□□□ 0.07
COL9A1P20849 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
COL9A1P20849 GACAT2-201ENST00000579368 818 ntTSL 2 BASIC15.5■□□□□ 0.07
COL9A1P20849 AC090164.2-201ENST00000611487 516 ntBASIC15.5■□□□□ 0.07
COL9A1P20849 AC015912.3-201ENST00000619432 348 ntBASIC15.5■□□□□ 0.07
COL9A1P20849 AQP7P3-201ENST00000624547 1041 ntBASIC15.5■□□□□ 0.07
COL9A1P20849 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
COL9A1P20849 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL9A1P20849 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL9A1P20849 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL9A1P20849 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC15.5■□□□□ 0.07
COL9A1P20849 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC15.5■□□□□ 0.07
COL9A1P20849 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
COL9A1P20849 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL9A1P20849 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC15.5■□□□□ 0.07
COL9A1P20849 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
COL9A1P20849 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL9A1P20849 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC15.5■□□□□ 0.07
COL9A1P20849 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL9A1P20849 AC006449.5-201ENST00000610658 2098 ntBASIC15.5■□□□□ 0.07
COL9A1P20849 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC15.5■□□□□ 0.07
COL9A1P20849 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL9A1P20849 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
COL9A1P20849 BLK-205ENST00000529894 2017 ntTSL 5 BASIC15.5■□□□□ 0.07
COL9A1P20849 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL9A1P20849 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
COL9A1P20849 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
COL9A1P20849 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL9A1P20849 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC15.49■□□□□ 0.07
COL9A1P20849 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
COL9A1P20849 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL9A1P20849 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL9A1P20849 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL9A1P20849 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
COL9A1P20849 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL9A1P20849 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
COL9A1P20849 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL9A1P20849 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL9A1P20849 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL9A1P20849 CASP2-203ENST00000392925 616 ntTSL 3 BASIC15.49■□□□□ 0.07
COL9A1P20849 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC15.49■□□□□ 0.07
COL9A1P20849 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC15.49■□□□□ 0.07
COL9A1P20849 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC15.49■□□□□ 0.07
COL9A1P20849 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC15.49■□□□□ 0.07
COL9A1P20849 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC15.49■□□□□ 0.07
COL9A1P20849 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC15.49■□□□□ 0.07
COL9A1P20849 AC142086.5-202ENST00000562500 217 ntBASIC15.49■□□□□ 0.07
COL9A1P20849 STUB1-204ENST00000564370 875 ntTSL 2 BASIC15.49■□□□□ 0.07
COL9A1P20849 THY1-209ENST00000580275 578 ntTSL 3 BASIC15.49■□□□□ 0.07
COL9A1P20849 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC15.49■□□□□ 0.07
COL9A1P20849 AC090950.1-202ENST00000605733 644 ntBASIC15.49■□□□□ 0.07
COL9A1P20849 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL9A1P20849 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
COL9A1P20849 RTN1-203ENST00000395090 1609 ntTSL 2 BASIC15.49■□□□□ 0.07
COL9A1P20849 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC15.49■□□□□ 0.07
COL9A1P20849 AL137077.2-201ENST00000635124 1608 ntBASIC15.49■□□□□ 0.07
COL9A1P20849 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
COL9A1P20849 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC15.49■□□□□ 0.07
COL9A1P20849 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
COL9A1P20849 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL9A1P20849 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL9A1P20849 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
COL9A1P20849 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC15.49■□□□□ 0.07
COL9A1P20849 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
COL9A1P20849 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL9A1P20849 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
COL9A1P20849 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL9A1P20849 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL9A1P20849 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
COL9A1P20849 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC15.48■□□□□ 0.07
COL9A1P20849 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL9A1P20849 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL9A1P20849 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL9A1P20849 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC15.48■□□□□ 0.07
COL9A1P20849 KRT8P4-201ENST00000509735 1454 ntBASIC15.48■□□□□ 0.07
COL9A1P20849 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL9A1P20849 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC15.48■□□□□ 0.07
COL9A1P20849 RN7SL258P-201ENST00000478664 300 ntBASIC15.48■□□□□ 0.07
COL9A1P20849 USP9YP2-201ENST00000504503 1000 ntBASIC15.48■□□□□ 0.07
COL9A1P20849 LINC00634-202ENST00000505157 222 ntBASIC15.48■□□□□ 0.07
COL9A1P20849 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC15.48■□□□□ 0.07
COL9A1P20849 USP9YP1-201ENST00000513521 1002 ntBASIC15.48■□□□□ 0.07
COL9A1P20849 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC15.48■□□□□ 0.07
COL9A1P20849 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
COL9A1P20849 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC15.48■□□□□ 0.07
COL9A1P20849 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 368.4 ms