Protein–RNA interactions for Protein: E9PIF3

NPIPA2, Nuclear pore complex-interacting protein family member A2, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA2E9PIF3 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC13.9□□□□□ -0.18
NPIPA2E9PIF3 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC13.9□□□□□ -0.18
NPIPA2E9PIF3 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC13.9□□□□□ -0.18
NPIPA2E9PIF3 MIR4538-201ENST00000581377 78 ntBASIC13.9□□□□□ -0.18
NPIPA2E9PIF3 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC13.9□□□□□ -0.18
NPIPA2E9PIF3 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
NPIPA2E9PIF3 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
NPIPA2E9PIF3 TECR-220ENST00000600083 1204 ntTSL 2 BASIC13.9□□□□□ -0.18
NPIPA2E9PIF3 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC13.9□□□□□ -0.18
NPIPA2E9PIF3 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NPIPA2E9PIF3 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NPIPA2E9PIF3 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NPIPA2E9PIF3 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
NPIPA2E9PIF3 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
NPIPA2E9PIF3 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
NPIPA2E9PIF3 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
NPIPA2E9PIF3 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC13.9□□□□□ -0.18
NPIPA2E9PIF3 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC13.9□□□□□ -0.18
NPIPA2E9PIF3 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
NPIPA2E9PIF3 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NPIPA2E9PIF3 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC13.9□□□□□ -0.18
NPIPA2E9PIF3 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC13.9□□□□□ -0.18
NPIPA2E9PIF3 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
NPIPA2E9PIF3 AC022532.1-201ENST00000624563 1728 ntBASIC13.9□□□□□ -0.18
NPIPA2E9PIF3 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
NPIPA2E9PIF3 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.19
NPIPA2E9PIF3 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
NPIPA2E9PIF3 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 ACTBP11-201ENST00000436287 1126 ntBASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 YBX1P6-201ENST00000442962 1002 ntBASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 GAPDHP40-201ENST00000505218 1006 ntBASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 RNA5SP412-201ENST00000516234 123 ntBASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 KRT90P-201ENST00000549264 1064 ntBASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 AC010328.2-201ENST00000597698 1111 ntBASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 AC025181.2-201ENST00000606994 802 ntBASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 LARP4-220ENST00000615080 856 ntTSL 5 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 GPR39-203ENST00000622084 900 ntTSL 5 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 RHOXF1P1-202ENST00000635473 501 ntBASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 AC067750.1-201ENST00000608826 6545 ntBASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
NPIPA2E9PIF3 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 60.2 ms