Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 PUDPP3-201ENST00000445368 636 ntBASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 AC125604.1-201ENST00000496255 707 ntBASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 AL133499.1-201ENST00000596207 608 ntBASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 CLUHP2-201ENST00000426660 1303 ntBASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 AC084364.1-201ENST00000551967 1556 ntBASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 AL157791.1-201ENST00000553667 1699 ntBASIC14.58□□□□□ -0.07
PCDHGA1Q9Y5H4 FRMD6-AS1-201ENST00000617151 2229 ntBASIC14.58□□□□□ -0.07
PCDHGA1Q9Y5H4 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.07
PCDHGA1Q9Y5H4 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.07
PCDHGA1Q9Y5H4 AC004899.1-201ENST00000424687 1714 ntBASIC14.58□□□□□ -0.07
PCDHGA1Q9Y5H4 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
PCDHGA1Q9Y5H4 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 FAM58BP-201ENST00000439056 645 ntBASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 RNMTL1P1-201ENST00000454103 560 ntBASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 AC068587.8-201ENST00000641239 219 ntBASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 AP000593.2-201ENST00000542775 1433 ntBASIC14.58□□□□□ -0.08
PCDHGA1Q9Y5H4 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 C8orf49-201ENST00000525043 1968 ntBASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 HNRNPA1P36-201ENST00000521313 955 ntBASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 AL162426.1-201ENST00000624141 743 ntBASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC14.57□□□□□ -0.08
PCDHGA1Q9Y5H4 AC055811.4-201ENST00000624039 1754 ntBASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms