Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 RERG-209ENST00000546331 1383 ntTSL 2 BASIC15.75■□□□□ 0.11
PCDH9Q9HC56 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 INTS4P1-203ENST00000641008 3683 ntBASIC15.74■□□□□ 0.11
PCDH9Q9HC56 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 AC092364.2-202ENST00000597012 1073 ntBASIC15.74■□□□□ 0.11
PCDH9Q9HC56 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 USP28-214ENST00000545540 3431 ntTSL 2 BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC15.74■□□□□ 0.11
PCDH9Q9HC56 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 C1R-202ENST00000536053 2347 ntTSL 2 BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 CLK3P2-201ENST00000427566 1453 ntBASIC15.73■□□□□ 0.11
PCDH9Q9HC56 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 AC055876.2-201ENST00000531834 546 ntBASIC15.73■□□□□ 0.11
PCDH9Q9HC56 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 AC036164.1-201ENST00000570544 333 ntBASIC15.73■□□□□ 0.11
PCDH9Q9HC56 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 AL132655.2-201ENST00000596276 594 ntBASIC15.73■□□□□ 0.11
PCDH9Q9HC56 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 SLC7A15P-201ENST00000424028 1363 ntBASIC15.73■□□□□ 0.11
PCDH9Q9HC56 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
PCDH9Q9HC56 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
PCDH9Q9HC56 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC15.72■□□□□ 0.11
PCDH9Q9HC56 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms