Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 AC005077.2-201ENST00000449786 690 ntBASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 IGHJ2P-201ENST00000454480 60 ntBASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 SERPINA13P-202ENST00000478994 924 ntBASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 NEU3-202ENST00000526068 431 ntTSL 2 BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 AC020914.3-201ENST00000594712 304 ntBASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 AL136301.1-201ENST00000615830 422 ntBASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 AL138725.1-201ENST00000407347 1314 ntBASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 LINC00554-201ENST00000564841 3011 ntBASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 ZEB1-AS1-208ENST00000607166 2503 ntBASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
PAAF1Q9BRP4 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC16.08■□□□□ 0.17
PAAF1Q9BRP4 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC16.08■□□□□ 0.17
PAAF1Q9BRP4 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.08■□□□□ 0.17
PAAF1Q9BRP4 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.08■□□□□ 0.17
PAAF1Q9BRP4 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC16.08■□□□□ 0.17
PAAF1Q9BRP4 AC105917.1-201ENST00000506637 2539 ntBASIC16.08■□□□□ 0.17
PAAF1Q9BRP4 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.08■□□□□ 0.17
PAAF1Q9BRP4 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
PAAF1Q9BRP4 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PAAF1Q9BRP4 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PAAF1Q9BRP4 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PAAF1Q9BRP4 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PAAF1Q9BRP4 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC16.08■□□□□ 0.16
PAAF1Q9BRP4 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC16.08■□□□□ 0.16
PAAF1Q9BRP4 RNMTL1P1-201ENST00000454103 560 ntBASIC16.08■□□□□ 0.16
PAAF1Q9BRP4 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC16.08■□□□□ 0.16
PAAF1Q9BRP4 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC16.08■□□□□ 0.16
PAAF1Q9BRP4 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC16.08■□□□□ 0.16
PAAF1Q9BRP4 AC022748.3-201ENST00000621828 275 ntBASIC16.08■□□□□ 0.16
PAAF1Q9BRP4 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC16.08■□□□□ 0.16
PAAF1Q9BRP4 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PAAF1Q9BRP4 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PAAF1Q9BRP4 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC16.08■□□□□ 0.16
PAAF1Q9BRP4 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PAAF1Q9BRP4 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PAAF1Q9BRP4 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
PAAF1Q9BRP4 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC16.08■□□□□ 0.16
PAAF1Q9BRP4 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
PAAF1Q9BRP4 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PAAF1Q9BRP4 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PAAF1Q9BRP4 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC16.08■□□□□ 0.16
PAAF1Q9BRP4 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 CSH2-202ENST00000345366 598 ntTSL 5 BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 AC016700.1-201ENST00000429424 312 ntBASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 ADM-202ENST00000524948 584 ntTSL 2 BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 NAT9-222ENST00000583476 583 ntTSL 3 BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC16.07■□□□□ 0.16
PAAF1Q9BRP4 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms