Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RNA5-8SN1-201ENST00000610460 153 ntBASIC17.4■□□□□ 0.38
USP28Q96RU2 RNA5-8SN5-202ENST00000612463 153 ntBASIC17.4■□□□□ 0.38
USP28Q96RU2 RNA5-8SN4-201ENST00000613359 153 ntBASIC17.4■□□□□ 0.38
USP28Q96RU2 RNA5-8SN5-201ENST00000619471 153 ntBASIC17.4■□□□□ 0.38
USP28Q96RU2 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP28Q96RU2 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP28Q96RU2 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC17.4■□□□□ 0.38
USP28Q96RU2 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP28Q96RU2 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP28Q96RU2 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP28Q96RU2 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
USP28Q96RU2 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP28Q96RU2 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
USP28Q96RU2 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USP28Q96RU2 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP28Q96RU2 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
USP28Q96RU2 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
USP28Q96RU2 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
USP28Q96RU2 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
USP28Q96RU2 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC17.39■□□□□ 0.38
USP28Q96RU2 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
USP28Q96RU2 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP28Q96RU2 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP28Q96RU2 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USP28Q96RU2 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP28Q96RU2 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP28Q96RU2 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
USP28Q96RU2 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
USP28Q96RU2 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP28Q96RU2 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP28Q96RU2 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP28Q96RU2 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP28Q96RU2 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
USP28Q96RU2 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP28Q96RU2 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP28Q96RU2 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP28Q96RU2 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
USP28Q96RU2 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USP28Q96RU2 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP28Q96RU2 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC17.39■□□□□ 0.37
USP28Q96RU2 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC17.39■□□□□ 0.37
USP28Q96RU2 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USP28Q96RU2 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC17.39■□□□□ 0.37
USP28Q96RU2 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC17.39■□□□□ 0.37
USP28Q96RU2 AC106028.4-201ENST00000614509 607 ntBASIC17.39■□□□□ 0.37
USP28Q96RU2 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC17.39■□□□□ 0.37
USP28Q96RU2 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
USP28Q96RU2 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC17.39■□□□□ 0.37
USP28Q96RU2 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USP28Q96RU2 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
USP28Q96RU2 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
USP28Q96RU2 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC17.39■□□□□ 0.37
USP28Q96RU2 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC17.39■□□□□ 0.37
USP28Q96RU2 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
USP28Q96RU2 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USP28Q96RU2 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP28Q96RU2 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
USP28Q96RU2 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP28Q96RU2 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USP28Q96RU2 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC17.39■□□□□ 0.37
USP28Q96RU2 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
USP28Q96RU2 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
USP28Q96RU2 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
USP28Q96RU2 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC17.38■□□□□ 0.37
USP28Q96RU2 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC17.38■□□□□ 0.37
USP28Q96RU2 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP28Q96RU2 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP28Q96RU2 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
USP28Q96RU2 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
USP28Q96RU2 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
USP28Q96RU2 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP28Q96RU2 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC17.38■□□□□ 0.37
USP28Q96RU2 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP28Q96RU2 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
USP28Q96RU2 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
USP28Q96RU2 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP28Q96RU2 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
USP28Q96RU2 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP28Q96RU2 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC17.38■□□□□ 0.37
USP28Q96RU2 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC17.38■□□□□ 0.37
USP28Q96RU2 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP28Q96RU2 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP28Q96RU2 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC17.38■□□□□ 0.37
USP28Q96RU2 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
USP28Q96RU2 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP28Q96RU2 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP28Q96RU2 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC17.38■□□□□ 0.37
USP28Q96RU2 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC17.38■□□□□ 0.37
USP28Q96RU2 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC17.38■□□□□ 0.37
USP28Q96RU2 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
USP28Q96RU2 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
USP28Q96RU2 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
USP28Q96RU2 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC17.38■□□□□ 0.37
USP28Q96RU2 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC17.38■□□□□ 0.37
USP28Q96RU2 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP28Q96RU2 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC17.38■□□□□ 0.37
USP28Q96RU2 DOC2GP-202ENST00000514950 1163 ntBASIC17.38■□□□□ 0.37
USP28Q96RU2 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC17.38■□□□□ 0.37
USP28Q96RU2 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC17.38■□□□□ 0.37
USP28Q96RU2 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms