Protein–RNA interactions for Protein: Q96PV0

SYNGAP1, Ras/Rap GTPase-activating protein SynGAP, humanhuman

Predictions only

Length 1,343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1Q96PV0 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 AL136309.1-201ENST00000403917 691 ntBASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 AL354877.1-201ENST00000424412 413 ntBASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 HIST2H2BB-201ENST00000449108 381 ntBASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 MPRIPP1-201ENST00000452433 1089 ntBASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 UPF3AP2-201ENST00000457924 1132 ntBASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 AP001002.3-201ENST00000623482 206 ntBASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 MYB-242ENST00000618728 3545 ntTSL 5 BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 KRT8P4-201ENST00000509735 1454 ntBASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 AC092850.2-201ENST00000623821 2697 ntBASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 STK33-217ENST00000534493 1895 ntTSL 2 BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SYNGAP1Q96PV0 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
SYNGAP1Q96PV0 NKAIN1P1-201ENST00000435754 582 ntBASIC17.21■□□□□ 0.35
SYNGAP1Q96PV0 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC17.21■□□□□ 0.35
SYNGAP1Q96PV0 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC17.21■□□□□ 0.35
SYNGAP1Q96PV0 EIF4HP1-201ENST00000453115 687 ntBASIC17.21■□□□□ 0.35
SYNGAP1Q96PV0 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC17.21■□□□□ 0.35
SYNGAP1Q96PV0 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC17.21■□□□□ 0.35
SYNGAP1Q96PV0 AC044849.1-201ENST00000519737 1188 ntBASIC17.21■□□□□ 0.35
SYNGAP1Q96PV0 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
SYNGAP1Q96PV0 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC17.21■□□□□ 0.35
SYNGAP1Q96PV0 FES-204ENST00000414248 2327 ntTSL 2 BASIC17.21■□□□□ 0.35
SYNGAP1Q96PV0 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SYNGAP1Q96PV0 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SYNGAP1Q96PV0 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
SYNGAP1Q96PV0 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SYNGAP1Q96PV0 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SYNGAP1Q96PV0 AC090616.6-203ENST00000579186 1945 ntBASIC17.21■□□□□ 0.35
SYNGAP1Q96PV0 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SYNGAP1Q96PV0 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC17.21■□□□□ 0.35
SYNGAP1Q96PV0 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
SYNGAP1Q96PV0 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
SYNGAP1Q96PV0 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SYNGAP1Q96PV0 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SYNGAP1Q96PV0 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SYNGAP1Q96PV0 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
SYNGAP1Q96PV0 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
SYNGAP1Q96PV0 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.34
SYNGAP1Q96PV0 DEF8-202ENST00000418391 852 ntTSL 2 BASIC17.21■□□□□ 0.34
SYNGAP1Q96PV0 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC17.21■□□□□ 0.34
SYNGAP1Q96PV0 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.34
SYNGAP1Q96PV0 KRTAP19-9P-201ENST00000421795 191 ntBASIC17.21■□□□□ 0.34
SYNGAP1Q96PV0 FTLP10-202ENST00000505798 471 ntBASIC17.21■□□□□ 0.34
SYNGAP1Q96PV0 DUX4L47-201ENST00000566374 394 ntBASIC17.21■□□□□ 0.34
SYNGAP1Q96PV0 AC138466.3-201ENST00000619983 221 ntBASIC17.21■□□□□ 0.34
SYNGAP1Q96PV0 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
SYNGAP1Q96PV0 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC17.2■□□□□ 0.34
SYNGAP1Q96PV0 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
SYNGAP1Q96PV0 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms