Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 FAM13B-203ENST00000425075 3098 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 AC004945.1-201ENST00000416738 983 ntBASIC4.76□□□□□ -1.65
SYNE1Q8NF91 AL162726.2-201ENST00000438986 1017 ntBASIC4.76□□□□□ -1.65
SYNE1Q8NF91 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 RNA5SP410-201ENST00000516285 106 ntBASIC4.76□□□□□ -1.65
SYNE1Q8NF91 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 GNRHR2-203ENST00000581100 1187 ntBASIC4.76□□□□□ -1.65
SYNE1Q8NF91 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 AL021578.1-201ENST00000613646 709 ntBASIC4.76□□□□□ -1.65
SYNE1Q8NF91 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 AL607033.1-201ENST00000623900 1599 ntBASIC4.76□□□□□ -1.65
SYNE1Q8NF91 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 INTS4P2-202ENST00000614726 2019 ntBASIC4.76□□□□□ -1.65
SYNE1Q8NF91 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 ABR-203ENST00000536794 2213 ntTSL 2 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 SCNN1D-202ENST00000338555 3475 ntAPPRIS ALT2 TSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 KRT43P-201ENST00000434019 910 ntBASIC4.75□□□□□ -1.65
SYNE1Q8NF91 AC015910.1-201ENST00000579400 975 ntBASIC4.75□□□□□ -1.65
SYNE1Q8NF91 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 BANP-204ENST00000393208 2283 ntTSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 AC134772.2-202ENST00000634384 3585 ntTSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 TUBB8P12-201ENST00000308911 1335 ntBASIC4.75□□□□□ -1.65
SYNE1Q8NF91 TUBB7P-202ENST00000428444 1305 ntBASIC4.75□□□□□ -1.65
SYNE1Q8NF91 TUBB8P7-204ENST00000567960 1332 ntBASIC4.75□□□□□ -1.65
SYNE1Q8NF91 AL133338.1-201ENST00000565695 1517 ntBASIC4.75□□□□□ -1.65
SYNE1Q8NF91 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 HS6ST1-201ENST00000259241 3932 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 PFN2-215ENST00000497148 743 ntTSL 4 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 ZBTB45P2-201ENST00000452245 1531 ntBASIC4.75□□□□□ -1.65
SYNE1Q8NF91 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 COL18A1-AS1-201ENST00000397787 3425 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 REXO1L8P-201ENST00000604378 1897 ntBASIC4.75□□□□□ -1.65
SYNE1Q8NF91 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 AC005695.3-201ENST00000614522 232 ntBASIC4.75□□□□□ -1.65
SYNE1Q8NF91 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 AC010327.5-201ENST00000586923 3061 ntBASIC4.75□□□□□ -1.65
SYNE1Q8NF91 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 AC134312.5-201ENST00000568031 1313 ntBASIC4.75□□□□□ -1.65
SYNE1Q8NF91 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms