Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC88AQ3V6T2 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC88AQ3V6T2 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC88AQ3V6T2 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
CCDC88AQ3V6T2 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC18.21■□□□□ 0.51
CCDC88AQ3V6T2 REXO1L5P-201ENST00000622260 2098 ntBASIC18.21■□□□□ 0.51
CCDC88AQ3V6T2 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
CCDC88AQ3V6T2 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.21■□□□□ 0.51
CCDC88AQ3V6T2 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC88AQ3V6T2 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
CCDC88AQ3V6T2 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC18.21■□□□□ 0.51
CCDC88AQ3V6T2 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC18.21■□□□□ 0.51
CCDC88AQ3V6T2 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC18.21■□□□□ 0.51
CCDC88AQ3V6T2 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC88AQ3V6T2 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC18.21■□□□□ 0.51
CCDC88AQ3V6T2 PHBP15-201ENST00000574228 665 ntBASIC18.21■□□□□ 0.51
CCDC88AQ3V6T2 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC88AQ3V6T2 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC18.21■□□□□ 0.51
CCDC88AQ3V6T2 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC88AQ3V6T2 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC18.21■□□□□ 0.51
CCDC88AQ3V6T2 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC88AQ3V6T2 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC88AQ3V6T2 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC18.21■□□□□ 0.51
CCDC88AQ3V6T2 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC88AQ3V6T2 AC018629.1-201ENST00000623381 1736 ntBASIC18.21■□□□□ 0.51
CCDC88AQ3V6T2 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC18.21■□□□□ 0.51
CCDC88AQ3V6T2 C18orf15-201ENST00000623680 2534 ntBASIC18.21■□□□□ 0.51
CCDC88AQ3V6T2 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC88AQ3V6T2 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC88AQ3V6T2 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
CCDC88AQ3V6T2 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
CCDC88AQ3V6T2 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC18.21■□□□□ 0.5
CCDC88AQ3V6T2 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.5
CCDC88AQ3V6T2 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
CCDC88AQ3V6T2 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 AL138725.1-201ENST00000407347 1314 ntBASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 CDC23-208ENST00000505120 455 ntTSL 3 BASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 AC020910.5-201ENST00000623668 1865 ntBASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 NCR3-202ENST00000376071 541 ntTSL 5 BASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 ORAOV1P1-201ENST00000503108 395 ntBASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 AC027237.1-201ENST00000560942 655 ntBASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 AL118516.1-201ENST00000564152 670 ntBASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC88AQ3V6T2 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
CCDC88AQ3V6T2 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC88AQ3V6T2 CYP4F23P-201ENST00000593402 1579 ntBASIC18.19■□□□□ 0.5
CCDC88AQ3V6T2 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC18.19■□□□□ 0.5
CCDC88AQ3V6T2 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC88AQ3V6T2 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
CCDC88AQ3V6T2 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC88AQ3V6T2 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC88AQ3V6T2 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC88AQ3V6T2 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC88AQ3V6T2 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC88AQ3V6T2 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC18.19■□□□□ 0.5
CCDC88AQ3V6T2 RPL8P2-201ENST00000430538 502 ntBASIC18.19■□□□□ 0.5
CCDC88AQ3V6T2 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC18.19■□□□□ 0.5
CCDC88AQ3V6T2 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CCDC88AQ3V6T2 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
CCDC88AQ3V6T2 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC18.19■□□□□ 0.5
CCDC88AQ3V6T2 CR383656.3-201ENST00000551315 183 ntBASIC18.19■□□□□ 0.5
CCDC88AQ3V6T2 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC18.19■□□□□ 0.5
CCDC88AQ3V6T2 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC18.19■□□□□ 0.5
CCDC88AQ3V6T2 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
CCDC88AQ3V6T2 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC88AQ3V6T2 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC18.19■□□□□ 0.5
CCDC88AQ3V6T2 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC18.19■□□□□ 0.5
CCDC88AQ3V6T2 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC88AQ3V6T2 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms