Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 AC069224.1-201ENST00000566372 1715 ntBASIC14.7□□□□□ -0.06
COL28A1Q2UY09 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 AC016700.1-201ENST00000429424 312 ntBASIC14.7□□□□□ -0.06
COL28A1Q2UY09 RPL13AP19-201ENST00000434320 584 ntBASIC14.7□□□□□ -0.06
COL28A1Q2UY09 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 KRT18P66-201ENST00000452970 1269 ntBASIC14.7□□□□□ -0.06
COL28A1Q2UY09 RN7SL11P-201ENST00000471305 293 ntBASIC14.7□□□□□ -0.06
COL28A1Q2UY09 LINC02447-202ENST00000501888 2146 ntBASIC14.7□□□□□ -0.06
COL28A1Q2UY09 AC022137.2-201ENST00000503482 481 ntBASIC14.7□□□□□ -0.06
COL28A1Q2UY09 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 AC243562.2-201ENST00000561247 970 ntBASIC14.7□□□□□ -0.06
COL28A1Q2UY09 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 CYGB-203ENST00000589145 788 ntTSL 3 BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 AL133499.1-201ENST00000596207 608 ntBASIC14.7□□□□□ -0.06
COL28A1Q2UY09 AC138649.2-201ENST00000615886 705 ntBASIC14.7□□□□□ -0.06
COL28A1Q2UY09 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 AP001282.1-201ENST00000531301 1499 ntBASIC14.69□□□□□ -0.06
COL28A1Q2UY09 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 AL691432.1-201ENST00000596308 1422 ntBASIC14.69□□□□□ -0.06
COL28A1Q2UY09 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 POM121L10P-201ENST00000436994 1285 ntBASIC14.69□□□□□ -0.06
COL28A1Q2UY09 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 AC010491.1-201ENST00000563101 2797 ntBASIC14.69□□□□□ -0.06
COL28A1Q2UY09 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 AC134407.2-201ENST00000625089 1978 ntBASIC14.69□□□□□ -0.06
COL28A1Q2UY09 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC14.69□□□□□ -0.06
COL28A1Q2UY09 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 SUPT20HL2-201ENST00000486479 2409 ntBASIC14.68□□□□□ -0.06
COL28A1Q2UY09 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
COL28A1Q2UY09 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC14.68□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms