Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
PRKDCP78527 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC10.58□□□□□ -0.71
PRKDCP78527 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC10.58□□□□□ -0.71
PRKDCP78527 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC10.58□□□□□ -0.71
PRKDCP78527 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
PRKDCP78527 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC10.58□□□□□ -0.72
PRKDCP78527 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC10.58□□□□□ -0.72
PRKDCP78527 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
PRKDCP78527 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC10.58□□□□□ -0.72
PRKDCP78527 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
PRKDCP78527 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC10.58□□□□□ -0.72
PRKDCP78527 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC10.58□□□□□ -0.72
PRKDCP78527 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
PRKDCP78527 TREX1-203ENST00000456089 629 ntTSL 3 BASIC10.58□□□□□ -0.72
PRKDCP78527 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC10.58□□□□□ -0.72
PRKDCP78527 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC10.58□□□□□ -0.72
PRKDCP78527 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC10.58□□□□□ -0.72
PRKDCP78527 YWHAE-212ENST00000575977 540 ntTSL 2 BASIC10.58□□□□□ -0.72
PRKDCP78527 AP001462.1-201ENST00000594089 452 ntBASIC10.58□□□□□ -0.72
PRKDCP78527 SP100-205ENST00000409824 1802 ntTSL 5 BASIC10.58□□□□□ -0.72
PRKDCP78527 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.72
PRKDCP78527 AL513523.2-202ENST00000427283 2040 ntBASIC10.58□□□□□ -0.72
PRKDCP78527 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
PRKDCP78527 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
PRKDCP78527 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
PRKDCP78527 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC10.58□□□□□ -0.72
PRKDCP78527 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
PRKDCP78527 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC10.58□□□□□ -0.72
PRKDCP78527 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC10.58□□□□□ -0.72
PRKDCP78527 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.72
PRKDCP78527 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
PRKDCP78527 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC10.58□□□□□ -0.72
PRKDCP78527 AL157823.1-201ENST00000403727 628 ntBASIC10.58□□□□□ -0.72
PRKDCP78527 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC10.58□□□□□ -0.72
PRKDCP78527 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC10.58□□□□□ -0.72
PRKDCP78527 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC10.58□□□□□ -0.72
PRKDCP78527 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC10.58□□□□□ -0.72
PRKDCP78527 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.72
PRKDCP78527 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
PRKDCP78527 AC006372.4-201ENST00000624122 1543 ntBASIC10.58□□□□□ -0.72
PRKDCP78527 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
PRKDCP78527 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC10.58□□□□□ -0.72
PRKDCP78527 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC10.58□□□□□ -0.72
PRKDCP78527 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
PRKDCP78527 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC10.58□□□□□ -0.72
PRKDCP78527 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC10.58□□□□□ -0.72
PRKDCP78527 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
PRKDCP78527 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
PRKDCP78527 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC10.58□□□□□ -0.72
PRKDCP78527 ANXA3-202ENST00000503570 1524 ntTSL 5 BASIC10.58□□□□□ -0.72
PRKDCP78527 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC10.58□□□□□ -0.72
PRKDCP78527 AL773545.2-201ENST00000442149 472 ntBASIC10.58□□□□□ -0.72
PRKDCP78527 GSS-202ENST00000451957 1092 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
PRKDCP78527 RNASEH2CP1-201ENST00000454281 502 ntBASIC10.58□□□□□ -0.72
PRKDCP78527 AC106789.1-201ENST00000512927 570 ntTSL 4 BASIC10.58□□□□□ -0.72
PRKDCP78527 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC10.58□□□□□ -0.72
PRKDCP78527 AC091304.3-201ENST00000566500 716 ntBASIC10.58□□□□□ -0.72
PRKDCP78527 AC016582.2-202ENST00000587765 1094 ntBASIC10.58□□□□□ -0.72
PRKDCP78527 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC10.58□□□□□ -0.72
PRKDCP78527 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC10.58□□□□□ -0.72
PRKDCP78527 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
PRKDCP78527 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC10.58□□□□□ -0.72
PRKDCP78527 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
PRKDCP78527 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
PRKDCP78527 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
PRKDCP78527 C22orf42-201ENST00000382097 1363 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
PRKDCP78527 LINC00682-202ENST00000499082 1384 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
PRKDCP78527 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC10.58□□□□□ -0.72
PRKDCP78527 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
PRKDCP78527 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC10.58□□□□□ -0.72
PRKDCP78527 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
PRKDCP78527 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
PRKDCP78527 AP002353.1-201ENST00000528257 1599 ntBASIC10.57□□□□□ -0.72
PRKDCP78527 HNRNPA1P2-207ENST00000432375 960 ntBASIC10.57□□□□□ -0.72
PRKDCP78527 AC025594.1-201ENST00000469533 543 ntBASIC10.57□□□□□ -0.72
PRKDCP78527 AC022447.5-201ENST00000504817 392 ntBASIC10.57□□□□□ -0.72
PRKDCP78527 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
PRKDCP78527 URB1-AS1-201ENST00000534991 831 ntBASIC10.57□□□□□ -0.72
PRKDCP78527 SRRM2-AS1-204ENST00000573802 818 ntTSL 2 BASIC10.57□□□□□ -0.72
PRKDCP78527 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC10.57□□□□□ -0.72
PRKDCP78527 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
PRKDCP78527 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
PRKDCP78527 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
PRKDCP78527 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC10.57□□□□□ -0.72
PRKDCP78527 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
PRKDCP78527 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
PRKDCP78527 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
PRKDCP78527 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC10.57□□□□□ -0.72
PRKDCP78527 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
PRKDCP78527 LYPLA2-203ENST00000374503 868 ntTSL 2 BASIC10.57□□□□□ -0.72
PRKDCP78527 R3HDM2P2-201ENST00000401880 2116 ntBASIC10.57□□□□□ -0.72
PRKDCP78527 KRT18P4-201ENST00000422599 1288 ntBASIC10.57□□□□□ -0.72
PRKDCP78527 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC10.57□□□□□ -0.72
PRKDCP78527 C10orf91-203ENST00000490765 462 ntTSL 3 BASIC10.57□□□□□ -0.72
PRKDCP78527 GABARAPL1-213ENST00000544284 531 ntTSL 3 BASIC10.57□□□□□ -0.72
PRKDCP78527 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC10.57□□□□□ -0.72
PRKDCP78527 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
PRKDCP78527 CYP1B1-AS1-204ENST00000589303 579 ntTSL 5 BASIC10.57□□□□□ -0.72
PRKDCP78527 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
PRKDCP78527 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms