Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.53■□□□□ 0.4
CTCFP49711 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC17.53■□□□□ 0.4
CTCFP49711 FAM90A7P-201ENST00000382628 1395 ntBASIC17.53■□□□□ 0.4
CTCFP49711 FAM90A23P-201ENST00000400136 1395 ntBASIC17.53■□□□□ 0.4
CTCFP49711 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CTCFP49711 FAM90A21P-201ENST00000510875 1396 ntBASIC17.53■□□□□ 0.4
CTCFP49711 FAM90A15P-201ENST00000514465 1395 ntBASIC17.53■□□□□ 0.4
CTCFP49711 FAM90A6P-201ENST00000515148 1394 ntBASIC17.53■□□□□ 0.4
CTCFP49711 FAM90A16P-201ENST00000526662 1395 ntBASIC17.53■□□□□ 0.4
CTCFP49711 FAM90A9P-201ENST00000527940 1395 ntBASIC17.53■□□□□ 0.4
CTCFP49711 FAM90A5P-201ENST00000528738 1395 ntBASIC17.53■□□□□ 0.4
CTCFP49711 FAM90A14P-201ENST00000530386 1395 ntBASIC17.53■□□□□ 0.4
CTCFP49711 FAM90A13P-201ENST00000534703 1395 ntBASIC17.53■□□□□ 0.4
CTCFP49711 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CTCFP49711 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CTCFP49711 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.4
CTCFP49711 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC17.52■□□□□ 0.4
CTCFP49711 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CTCFP49711 LINC02199-201ENST00000506655 2702 ntBASIC17.52■□□□□ 0.4
CTCFP49711 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CTCFP49711 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CTCFP49711 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CTCFP49711 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CTCFP49711 CTSL-202ENST00000342020 933 ntTSL 2 BASIC17.52■□□□□ 0.4
CTCFP49711 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC17.52■□□□□ 0.4
CTCFP49711 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC17.52■□□□□ 0.4
CTCFP49711 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC17.52■□□□□ 0.4
CTCFP49711 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC17.52■□□□□ 0.4
CTCFP49711 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC17.52■□□□□ 0.4
CTCFP49711 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC17.52■□□□□ 0.4
CTCFP49711 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC17.52■□□□□ 0.4
CTCFP49711 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC17.52■□□□□ 0.4
CTCFP49711 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
CTCFP49711 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.52■□□□□ 0.4
CTCFP49711 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
CTCFP49711 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CTCFP49711 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CTCFP49711 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC17.52■□□□□ 0.39
CTCFP49711 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CTCFP49711 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC17.52■□□□□ 0.39
CTCFP49711 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC17.52■□□□□ 0.39
CTCFP49711 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC17.52■□□□□ 0.39
CTCFP49711 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CTCFP49711 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.51■□□□□ 0.39
CTCFP49711 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CTCFP49711 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17.51■□□□□ 0.39
CTCFP49711 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CTCFP49711 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CTCFP49711 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CTCFP49711 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CTCFP49711 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CTCFP49711 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC17.51■□□□□ 0.39
CTCFP49711 AL139094.1-201ENST00000405549 1188 ntBASIC17.51■□□□□ 0.39
CTCFP49711 HIST2H2BA-201ENST00000412169 381 ntBASIC17.51■□□□□ 0.39
CTCFP49711 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC17.51■□□□□ 0.39
CTCFP49711 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC17.51■□□□□ 0.39
CTCFP49711 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC17.51■□□□□ 0.39
CTCFP49711 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC17.51■□□□□ 0.39
CTCFP49711 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC17.51■□□□□ 0.39
CTCFP49711 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
CTCFP49711 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC17.51■□□□□ 0.39
CTCFP49711 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CTCFP49711 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC17.51■□□□□ 0.39
CTCFP49711 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CTCFP49711 AL139339.2-201ENST00000608063 657 ntBASIC17.51■□□□□ 0.39
CTCFP49711 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CTCFP49711 AC005618.3-201ENST00000624928 458 ntBASIC17.51■□□□□ 0.39
CTCFP49711 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CTCFP49711 AL645728.1-201ENST00000366221 2101 ntBASIC17.51■□□□□ 0.39
CTCFP49711 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CTCFP49711 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC17.51■□□□□ 0.39
CTCFP49711 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CTCFP49711 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CTCFP49711 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.51■□□□□ 0.39
CTCFP49711 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC17.51■□□□□ 0.39
CTCFP49711 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CTCFP49711 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
CTCFP49711 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CTCFP49711 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CTCFP49711 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC17.5■□□□□ 0.39
CTCFP49711 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CTCFP49711 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CTCFP49711 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CTCFP49711 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
CTCFP49711 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CTCFP49711 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
CTCFP49711 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CTCFP49711 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC17.5■□□□□ 0.39
CTCFP49711 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC17.5■□□□□ 0.39
CTCFP49711 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CTCFP49711 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC17.5■□□□□ 0.39
CTCFP49711 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC17.5■□□□□ 0.39
CTCFP49711 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC17.5■□□□□ 0.39
CTCFP49711 AC055811.3-201ENST00000584952 686 ntBASIC17.5■□□□□ 0.39
CTCFP49711 AP005212.2-201ENST00000584979 510 ntBASIC17.5■□□□□ 0.39
CTCFP49711 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC17.5■□□□□ 0.39
CTCFP49711 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC17.5■□□□□ 0.39
CTCFP49711 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
CTCFP49711 AL645728.2-202ENST00000641679 227 ntBASIC17.5■□□□□ 0.39
CTCFP49711 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms