Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC13.29□□□□□ -0.28
COL8A1P27658 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC13.29□□□□□ -0.28
COL8A1P27658 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC13.29□□□□□ -0.28
COL8A1P27658 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL8A1P27658 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL8A1P27658 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
COL8A1P27658 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
COL8A1P27658 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC13.29□□□□□ -0.28
COL8A1P27658 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL8A1P27658 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL8A1P27658 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC13.29□□□□□ -0.28
COL8A1P27658 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL8A1P27658 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
COL8A1P27658 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL8A1P27658 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL8A1P27658 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC13.29□□□□□ -0.28
COL8A1P27658 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC13.29□□□□□ -0.28
COL8A1P27658 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC13.29□□□□□ -0.28
COL8A1P27658 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL8A1P27658 TK2-221ENST00000620035 5060 ntTSL 2 BASIC13.29□□□□□ -0.28
COL8A1P27658 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL8A1P27658 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
COL8A1P27658 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC13.29□□□□□ -0.28
COL8A1P27658 AL133267.1-201ENST00000398220 340 ntBASIC13.29□□□□□ -0.28
COL8A1P27658 CHMP1AP1-201ENST00000445563 662 ntBASIC13.29□□□□□ -0.28
COL8A1P27658 RPL7P35-201ENST00000446943 740 ntBASIC13.29□□□□□ -0.28
COL8A1P27658 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC13.29□□□□□ -0.28
COL8A1P27658 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
COL8A1P27658 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC13.29□□□□□ -0.28
COL8A1P27658 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL8A1P27658 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC13.29□□□□□ -0.28
COL8A1P27658 ALG1L13P-202ENST00000519320 584 ntBASIC13.29□□□□□ -0.28
COL8A1P27658 AC090857.1-201ENST00000527400 390 ntBASIC13.29□□□□□ -0.28
COL8A1P27658 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC13.29□□□□□ -0.28
COL8A1P27658 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC13.29□□□□□ -0.28
COL8A1P27658 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC13.29□□□□□ -0.28
COL8A1P27658 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC13.29□□□□□ -0.28
COL8A1P27658 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC13.29□□□□□ -0.28
COL8A1P27658 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL8A1P27658 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC13.29□□□□□ -0.28
COL8A1P27658 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL8A1P27658 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL8A1P27658 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC13.29□□□□□ -0.28
COL8A1P27658 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL8A1P27658 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL8A1P27658 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL8A1P27658 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL8A1P27658 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL8A1P27658 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC13.29□□□□□ -0.28
COL8A1P27658 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL8A1P27658 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL8A1P27658 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC13.29□□□□□ -0.28
COL8A1P27658 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL8A1P27658 AC007787.1-201ENST00000588095 1583 ntBASIC13.28□□□□□ -0.28
COL8A1P27658 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
COL8A1P27658 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL8A1P27658 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL8A1P27658 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC13.28□□□□□ -0.28
COL8A1P27658 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
COL8A1P27658 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC13.28□□□□□ -0.28
COL8A1P27658 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL8A1P27658 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL8A1P27658 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
COL8A1P27658 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC13.28□□□□□ -0.28
COL8A1P27658 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL8A1P27658 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL8A1P27658 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
COL8A1P27658 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL8A1P27658 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
COL8A1P27658 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL8A1P27658 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
COL8A1P27658 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL8A1P27658 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL8A1P27658 HPGD-203ENST00000422112 805 ntTSL 2 BASIC13.28□□□□□ -0.28
COL8A1P27658 GHSR-202ENST00000427970 912 ntBASIC13.28□□□□□ -0.28
COL8A1P27658 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC13.28□□□□□ -0.28
COL8A1P27658 MARK2P5-201ENST00000507649 634 ntBASIC13.28□□□□□ -0.28
COL8A1P27658 AC084866.2-201ENST00000509956 449 ntTSL 2 BASIC13.28□□□□□ -0.28
COL8A1P27658 NSD1-211ENST00000511258 809 ntTSL 3 BASIC13.28□□□□□ -0.28
COL8A1P27658 AP002803.1-201ENST00000528836 498 ntBASIC13.28□□□□□ -0.28
COL8A1P27658 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
COL8A1P27658 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC13.28□□□□□ -0.28
COL8A1P27658 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL8A1P27658 IRF3-215ENST00000596822 823 ntTSL 3 BASIC13.28□□□□□ -0.28
COL8A1P27658 DGAT2L7P-201ENST00000602462 744 ntBASIC13.28□□□□□ -0.28
COL8A1P27658 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC13.28□□□□□ -0.28
COL8A1P27658 AC068587.8-201ENST00000641239 219 ntBASIC13.28□□□□□ -0.28
COL8A1P27658 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC13.28□□□□□ -0.28
COL8A1P27658 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC13.28□□□□□ -0.28
COL8A1P27658 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC13.28□□□□□ -0.28
COL8A1P27658 AC074138.1-201ENST00000611182 1303 ntBASIC13.28□□□□□ -0.28
COL8A1P27658 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL8A1P27658 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
COL8A1P27658 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL8A1P27658 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL8A1P27658 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC13.28□□□□□ -0.28
COL8A1P27658 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL8A1P27658 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC13.28□□□□□ -0.28
COL8A1P27658 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL8A1P27658 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC13.28□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 64.1 ms