Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC091304.3-201ENST00000566500 716 ntBASIC15.33■□□□□ 0.04
COL6A3P12111 AC012617.1-202ENST00000586488 509 ntTSL 2 BASIC15.33■□□□□ 0.04
COL6A3P12111 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
COL6A3P12111 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
COL6A3P12111 PLA2G15-203ENST00000444212 943 ntTSL 2 BASIC15.32■□□□□ 0.04
COL6A3P12111 RN7SL340P-201ENST00000470792 296 ntBASIC15.32■□□□□ 0.04
COL6A3P12111 ALG3P1-201ENST00000508806 1114 ntBASIC15.32■□□□□ 0.04
COL6A3P12111 TBX5-AS1-202ENST00000531024 766 ntTSL 3 BASIC15.32■□□□□ 0.04
COL6A3P12111 BOLA3P2-201ENST00000586496 323 ntBASIC15.32■□□□□ 0.04
COL6A3P12111 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC15.32■□□□□ 0.04
COL6A3P12111 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
COL6A3P12111 BCKDHA-202ENST00000457836 1745 ntTSL 2 BASIC15.32■□□□□ 0.04
COL6A3P12111 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC15.32■□□□□ 0.04
COL6A3P12111 CYP4F29P-202ENST00000428301 1279 ntTSL 2 BASIC15.32■□□□□ 0.04
COL6A3P12111 PFN2-205ENST00000461868 613 ntTSL 2 BASIC15.32■□□□□ 0.04
COL6A3P12111 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
COL6A3P12111 AC004889.1-201ENST00000498693 856 ntTSL 5 BASIC15.32■□□□□ 0.04
COL6A3P12111 RPS23-207ENST00000511844 530 ntTSL 2 BASIC15.32■□□□□ 0.04
COL6A3P12111 AC007223.1-201ENST00000564076 572 ntTSL 3 BASIC15.32■□□□□ 0.04
COL6A3P12111 BCAS4-206ENST00000609336 787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL6A3P12111 ZFAS1-208ENST00000618800 597 ntTSL 3 BASIC15.32■□□□□ 0.04
COL6A3P12111 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC15.32■□□□□ 0.04
COL6A3P12111 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL6A3P12111 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL6A3P12111 AC006372.4-201ENST00000624122 1543 ntBASIC15.32■□□□□ 0.04
COL6A3P12111 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL6A3P12111 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC15.32■□□□□ 0.04
COL6A3P12111 FXYD2-202ENST00000292079 571 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL6A3P12111 AC147876.1-201ENST00000504408 322 ntBASIC15.32■□□□□ 0.04
COL6A3P12111 CD164-210ENST00000512821 964 ntTSL 2 BASIC15.32■□□□□ 0.04
COL6A3P12111 C11orf45-202ENST00000524878 609 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL6A3P12111 AC120498.7-201ENST00000562876 330 ntBASIC15.32■□□□□ 0.04
COL6A3P12111 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC15.32■□□□□ 0.04
COL6A3P12111 AC008825.2-201ENST00000603374 718 ntBASIC15.32■□□□□ 0.04
COL6A3P12111 AP001094.4-201ENST00000579008 2176 ntBASIC15.32■□□□□ 0.04
COL6A3P12111 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL6A3P12111 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
COL6A3P12111 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A3P12111 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC15.31■□□□□ 0.04
COL6A3P12111 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC15.31■□□□□ 0.04
COL6A3P12111 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
COL6A3P12111 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC15.31■□□□□ 0.04
COL6A3P12111 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
COL6A3P12111 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.31■□□□□ 0.04
COL6A3P12111 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
COL6A3P12111 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
COL6A3P12111 SUMO1-202ENST00000392245 1071 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
COL6A3P12111 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC15.31■□□□□ 0.04
COL6A3P12111 AC087741.1-205ENST00000572730 750 ntTSL 3 BASIC15.31■□□□□ 0.04
COL6A3P12111 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC15.31■□□□□ 0.04
COL6A3P12111 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC15.31■□□□□ 0.04
COL6A3P12111 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
COL6A3P12111 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
COL6A3P12111 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
COL6A3P12111 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A3P12111 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A3P12111 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC15.31■□□□□ 0.04
COL6A3P12111 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A3P12111 AC106785.2-201ENST00000564385 1319 ntBASIC15.31■□□□□ 0.04
COL6A3P12111 PLEKHG6-202ENST00000304581 1424 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A3P12111 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A3P12111 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
COL6A3P12111 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A3P12111 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A3P12111 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC15.31■□□□□ 0.04
COL6A3P12111 KRTAP2-3-201ENST00000391418 875 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
COL6A3P12111 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A3P12111 AC016582.2-202ENST00000587765 1094 ntBASIC15.31■□□□□ 0.04
COL6A3P12111 GGNBP1-204ENST00000613113 887 ntBASIC15.31■□□□□ 0.04
COL6A3P12111 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A3P12111 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC15.31■□□□□ 0.04
COL6A3P12111 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A3P12111 AKIP1-203ENST00000309377 1327 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A3P12111 ME2P1-201ENST00000426028 1970 ntBASIC15.31■□□□□ 0.04
COL6A3P12111 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
COL6A3P12111 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC15.31■□□□□ 0.04
COL6A3P12111 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A3P12111 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A3P12111 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A3P12111 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A3P12111 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC15.3■□□□□ 0.04
COL6A3P12111 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC15.3■□□□□ 0.04
COL6A3P12111 OR2R1P-201ENST00000441404 914 ntBASIC15.3■□□□□ 0.04
COL6A3P12111 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC15.3■□□□□ 0.04
COL6A3P12111 IP6K2-223ENST00000453202 571 ntTSL 4 BASIC15.3■□□□□ 0.04
COL6A3P12111 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC15.3■□□□□ 0.04
COL6A3P12111 SHBG-217ENST00000576478 639 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A3P12111 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A3P12111 AC138761.6-201ENST00000583997 1423 ntBASIC15.3■□□□□ 0.04
COL6A3P12111 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
COL6A3P12111 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
COL6A3P12111 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A3P12111 AC079325.1-201ENST00000430386 857 ntBASIC15.3■□□□□ 0.04
COL6A3P12111 MBP-230ENST00000528160 584 ntTSL 5 BASIC15.3■□□□□ 0.04
COL6A3P12111 MST1L-204ENST00000545160 559 ntTSL 4 BASIC15.3■□□□□ 0.04
COL6A3P12111 HNRNPA1P5-201ENST00000558213 966 ntBASIC15.3■□□□□ 0.04
COL6A3P12111 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A3P12111 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A3P12111 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A3P12111 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms