Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXN3O00409 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
FOXN3O00409 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXN3O00409 AC023090.2-201ENST00000625182 2110 ntBASIC16.3■□□□□ 0.2
FOXN3O00409 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC16.3■□□□□ 0.2
FOXN3O00409 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC16.3■□□□□ 0.2
FOXN3O00409 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXN3O00409 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
FOXN3O00409 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
FOXN3O00409 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXN3O00409 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC16.3■□□□□ 0.2
FOXN3O00409 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXN3O00409 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC16.3■□□□□ 0.2
FOXN3O00409 C1QBPP1-201ENST00000400117 770 ntBASIC16.3■□□□□ 0.2
FOXN3O00409 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC16.3■□□□□ 0.2
FOXN3O00409 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC16.3■□□□□ 0.2
FOXN3O00409 AL442647.2-201ENST00000429864 857 ntBASIC16.3■□□□□ 0.2
FOXN3O00409 HNRNPA1P13-201ENST00000510646 963 ntBASIC16.3■□□□□ 0.2
FOXN3O00409 API5-211ENST00000534695 560 ntTSL 5 BASIC16.3■□□□□ 0.2
FOXN3O00409 SPCS2P1-201ENST00000561636 679 ntBASIC16.3■□□□□ 0.2
FOXN3O00409 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC16.3■□□□□ 0.2
FOXN3O00409 TMEM261P1-201ENST00000604899 340 ntBASIC16.3■□□□□ 0.2
FOXN3O00409 AC004233.3-201ENST00000607794 1269 ntBASIC16.3■□□□□ 0.2
FOXN3O00409 BX539320.1-201ENST00000623759 877 ntBASIC16.3■□□□□ 0.2
FOXN3O00409 AC008761.3-201ENST00000624803 892 ntBASIC16.3■□□□□ 0.2
FOXN3O00409 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC16.3■□□□□ 0.2
FOXN3O00409 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
FOXN3O00409 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC16.3■□□□□ 0.2
FOXN3O00409 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXN3O00409 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXN3O00409 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
FOXN3O00409 AC026748.1-201ENST00000624349 3251 ntBASIC16.3■□□□□ 0.2
FOXN3O00409 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
FOXN3O00409 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
FOXN3O00409 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC16.29■□□□□ 0.2
FOXN3O00409 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXN3O00409 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXN3O00409 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
FOXN3O00409 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXN3O00409 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
FOXN3O00409 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC16.29■□□□□ 0.2
FOXN3O00409 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC16.29■□□□□ 0.2
FOXN3O00409 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXN3O00409 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC16.29■□□□□ 0.2
FOXN3O00409 AL391825.1-201ENST00000457671 1364 ntBASIC16.29■□□□□ 0.2
FOXN3O00409 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXN3O00409 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC16.29■□□□□ 0.2
FOXN3O00409 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
FOXN3O00409 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
FOXN3O00409 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC16.29■□□□□ 0.2
FOXN3O00409 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXN3O00409 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXN3O00409 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXN3O00409 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
FOXN3O00409 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXN3O00409 NUS1P3-201ENST00000423502 862 ntBASIC16.29■□□□□ 0.2
FOXN3O00409 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC16.29■□□□□ 0.2
FOXN3O00409 FAM207CP-201ENST00000443486 507 ntBASIC16.29■□□□□ 0.2
FOXN3O00409 MYCLP2-201ENST00000449268 967 ntBASIC16.29■□□□□ 0.2
FOXN3O00409 GLI4-203ENST00000517468 963 ntTSL 5 BASIC16.29■□□□□ 0.2
FOXN3O00409 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC16.29■□□□□ 0.2
FOXN3O00409 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC16.29■□□□□ 0.2
FOXN3O00409 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC16.29■□□□□ 0.2
FOXN3O00409 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC16.29■□□□□ 0.2
FOXN3O00409 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
FOXN3O00409 AC007431.3-201ENST00000623221 587 ntBASIC16.29■□□□□ 0.2
FOXN3O00409 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
FOXN3O00409 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXN3O00409 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC16.29■□□□□ 0.2
FOXN3O00409 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
FOXN3O00409 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXN3O00409 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
FOXN3O00409 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXN3O00409 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
FOXN3O00409 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
FOXN3O00409 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
FOXN3O00409 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXN3O00409 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXN3O00409 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
FOXN3O00409 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC16.29■□□□□ 0.2
FOXN3O00409 AGER-206ENST00000375070 1463 ntTSL 5 BASIC16.29■□□□□ 0.2
FOXN3O00409 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
FOXN3O00409 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
FOXN3O00409 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXN3O00409 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC16.28■□□□□ 0.2
FOXN3O00409 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC16.28■□□□□ 0.2
FOXN3O00409 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
FOXN3O00409 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXN3O00409 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
FOXN3O00409 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC16.28■□□□□ 0.2
FOXN3O00409 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
FOXN3O00409 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXN3O00409 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXN3O00409 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC16.28■□□□□ 0.2
FOXN3O00409 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC16.28■□□□□ 0.2
FOXN3O00409 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXN3O00409 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXN3O00409 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC16.28■□□□□ 0.2
FOXN3O00409 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
FOXN3O00409 AC236430.1-201ENST00000402231 743 ntBASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms