Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PDLIM1O00151 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PDLIM1O00151 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PDLIM1O00151 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
PDLIM1O00151 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
PDLIM1O00151 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PDLIM1O00151 TFAMP1-201ENST00000412727 736 ntBASIC14.62□□□□□ -0.07
PDLIM1O00151 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PDLIM1O00151 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC14.62□□□□□ -0.07
PDLIM1O00151 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
PDLIM1O00151 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
PDLIM1O00151 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PDLIM1O00151 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC14.62□□□□□ -0.07
PDLIM1O00151 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC14.62□□□□□ -0.07
PDLIM1O00151 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
PDLIM1O00151 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC14.62□□□□□ -0.07
PDLIM1O00151 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC14.62□□□□□ -0.07
PDLIM1O00151 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PDLIM1O00151 AC026120.1-201ENST00000611536 926 ntBASIC14.62□□□□□ -0.07
PDLIM1O00151 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
PDLIM1O00151 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PDLIM1O00151 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC14.62□□□□□ -0.07
PDLIM1O00151 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PDLIM1O00151 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PDLIM1O00151 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PDLIM1O00151 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PDLIM1O00151 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC14.62□□□□□ -0.07
PDLIM1O00151 AP001972.5-201ENST00000624624 2338 ntBASIC14.61□□□□□ -0.07
PDLIM1O00151 WASH3P-207ENST00000560956 1394 ntBASIC14.61□□□□□ -0.07
PDLIM1O00151 FO538757.1-201ENST00000623083 1397 ntBASIC14.61□□□□□ -0.07
PDLIM1O00151 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
PDLIM1O00151 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
PDLIM1O00151 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
PDLIM1O00151 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PDLIM1O00151 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PDLIM1O00151 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PDLIM1O00151 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC14.61□□□□□ -0.07
PDLIM1O00151 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PDLIM1O00151 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC14.61□□□□□ -0.07
PDLIM1O00151 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC14.61□□□□□ -0.07
PDLIM1O00151 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PDLIM1O00151 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PDLIM1O00151 AC018529.2-202ENST00000611482 3087 ntBASIC14.61□□□□□ -0.07
PDLIM1O00151 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
PDLIM1O00151 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC14.61□□□□□ -0.07
PDLIM1O00151 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
PDLIM1O00151 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
PDLIM1O00151 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PDLIM1O00151 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC14.61□□□□□ -0.07
PDLIM1O00151 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
PDLIM1O00151 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PDLIM1O00151 DNAJB3-202ENST00000449667 1266 ntBASIC14.61□□□□□ -0.07
PDLIM1O00151 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC14.61□□□□□ -0.07
PDLIM1O00151 RN7SL589P-201ENST00000481268 310 ntBASIC14.61□□□□□ -0.07
PDLIM1O00151 AP000344.2-201ENST00000512987 629 ntBASIC14.61□□□□□ -0.07
PDLIM1O00151 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC14.61□□□□□ -0.07
PDLIM1O00151 AC243562.1-201ENST00000560672 389 ntBASIC14.61□□□□□ -0.07
PDLIM1O00151 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC14.61□□□□□ -0.07
PDLIM1O00151 AL135744.1-201ENST00000565098 629 ntBASIC14.61□□□□□ -0.07
PDLIM1O00151 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC14.61□□□□□ -0.07
PDLIM1O00151 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC14.61□□□□□ -0.07
PDLIM1O00151 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC14.61□□□□□ -0.07
PDLIM1O00151 AP001160.2-201ENST00000596071 487 ntBASIC14.61□□□□□ -0.07
PDLIM1O00151 AC022145.2-201ENST00000598203 171 ntBASIC14.61□□□□□ -0.07
PDLIM1O00151 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC14.61□□□□□ -0.07
PDLIM1O00151 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC14.61□□□□□ -0.07
PDLIM1O00151 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.61□□□□□ -0.07
PDLIM1O00151 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PDLIM1O00151 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
PDLIM1O00151 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
PDLIM1O00151 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
PDLIM1O00151 ADD2-202ENST00000355733 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
PDLIM1O00151 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PDLIM1O00151 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC14.61□□□□□ -0.07
PDLIM1O00151 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC14.61□□□□□ -0.07
PDLIM1O00151 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
PDLIM1O00151 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PDLIM1O00151 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
PDLIM1O00151 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PDLIM1O00151 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
PDLIM1O00151 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC14.61□□□□□ -0.07
PDLIM1O00151 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC14.61□□□□□ -0.07
PDLIM1O00151 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.61□□□□□ -0.07
PDLIM1O00151 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
PDLIM1O00151 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PDLIM1O00151 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC14.61□□□□□ -0.07
PDLIM1O00151 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
PDLIM1O00151 MKLN1-203ENST00000421797 2460 ntTSL 2 BASIC14.6□□□□□ -0.07
PDLIM1O00151 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
PDLIM1O00151 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PDLIM1O00151 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC14.6□□□□□ -0.07
PDLIM1O00151 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
PDLIM1O00151 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PDLIM1O00151 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PDLIM1O00151 KCNIP1-208ENST00000520740 1845 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
PDLIM1O00151 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PDLIM1O00151 GULP1-207ENST00000409843 2643 ntAPPRIS ALT1 TSL 2 BASIC14.6□□□□□ -0.07
PDLIM1O00151 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
PDLIM1O00151 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
PDLIM1O00151 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms