Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
TRAIPQ9BWF2 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
TRAIPQ9BWF2 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
TRAIPQ9BWF2 KRT8P14-201ENST00000414254 1442 ntBASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 TNRC18P2-201ENST00000417666 2714 ntBASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 BRWD1P1-201ENST00000401091 371 ntBASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 LSM5-207ENST00000410044 687 ntTSL 3 BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 PFN1P12-201ENST00000455938 534 ntBASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 FAM8A2P-201ENST00000528813 1142 ntBASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 DERL2-202ENST00000570848 657 ntTSL 5 BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 RN7SL560P-201ENST00000577943 264 ntBASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 BX547991.1-201ENST00000582543 1206 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 RN7SL219P-201ENST00000582872 296 ntBASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 AMT-224ENST00000635808 1610 ntTSL 5 BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 AC099063.4-201ENST00000641099 1602 ntBASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAIPQ9BWF2 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 RPL13AP20-201ENST00000459725 609 ntBASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 AC108725.1-201ENST00000495472 409 ntBASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 AGER-214ENST00000538695 487 ntTSL 2 BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRAIPQ9BWF2 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms