Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC24.36■■□□□ 1.49
IFT140Q96RY7 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
IFT140Q96RY7 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC24.36■■□□□ 1.49
IFT140Q96RY7 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC24.36■■□□□ 1.49
IFT140Q96RY7 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
IFT140Q96RY7 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
IFT140Q96RY7 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC24.35■■□□□ 1.49
IFT140Q96RY7 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
IFT140Q96RY7 FUCA1P1-201ENST00000374476 1351 ntBASIC24.35■■□□□ 1.49
IFT140Q96RY7 NME2-201ENST00000393183 568 ntTSL 2 BASIC24.35■■□□□ 1.49
IFT140Q96RY7 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC24.35■■□□□ 1.49
IFT140Q96RY7 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC24.35■■□□□ 1.49
IFT140Q96RY7 AC092862.1-201ENST00000541534 533 ntBASIC24.35■■□□□ 1.49
IFT140Q96RY7 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC24.35■■□□□ 1.49
IFT140Q96RY7 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC24.35■■□□□ 1.49
IFT140Q96RY7 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC24.35■■□□□ 1.49
IFT140Q96RY7 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
IFT140Q96RY7 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
IFT140Q96RY7 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC24.35■■□□□ 1.49
IFT140Q96RY7 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC24.35■■□□□ 1.49
IFT140Q96RY7 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
IFT140Q96RY7 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC24.35■■□□□ 1.49
IFT140Q96RY7 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC24.35■■□□□ 1.49
IFT140Q96RY7 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
IFT140Q96RY7 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
IFT140Q96RY7 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC24.35■■□□□ 1.49
IFT140Q96RY7 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
IFT140Q96RY7 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC24.34■■□□□ 1.49
IFT140Q96RY7 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
IFT140Q96RY7 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
IFT140Q96RY7 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
IFT140Q96RY7 COX8A-201ENST00000314133 507 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
IFT140Q96RY7 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC24.34■■□□□ 1.49
IFT140Q96RY7 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
IFT140Q96RY7 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC24.34■■□□□ 1.49
IFT140Q96RY7 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC24.34■■□□□ 1.49
IFT140Q96RY7 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC24.34■■□□□ 1.49
IFT140Q96RY7 FOXN3-AS2-201ENST00000554071 1262 ntBASIC24.34■■□□□ 1.49
IFT140Q96RY7 EMC4-208ENST00000559078 599 ntTSL 3 BASIC24.34■■□□□ 1.49
IFT140Q96RY7 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC24.34■■□□□ 1.49
IFT140Q96RY7 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC24.34■■□□□ 1.49
IFT140Q96RY7 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC24.34■■□□□ 1.49
IFT140Q96RY7 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
IFT140Q96RY7 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC24.34■■□□□ 1.49
IFT140Q96RY7 AL513523.2-202ENST00000427283 2040 ntBASIC24.34■■□□□ 1.49
IFT140Q96RY7 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC24.34■■□□□ 1.49
IFT140Q96RY7 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC24.34■■□□□ 1.49
IFT140Q96RY7 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
IFT140Q96RY7 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
IFT140Q96RY7 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
IFT140Q96RY7 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
IFT140Q96RY7 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC24.33■■□□□ 1.49
IFT140Q96RY7 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
IFT140Q96RY7 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
IFT140Q96RY7 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC24.33■■□□□ 1.49
IFT140Q96RY7 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
IFT140Q96RY7 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC24.33■■□□□ 1.49
IFT140Q96RY7 AC092580.1-201ENST00000433998 658 ntBASIC24.33■■□□□ 1.49
IFT140Q96RY7 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC24.33■■□□□ 1.49
IFT140Q96RY7 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC24.33■■□□□ 1.49
IFT140Q96RY7 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC24.33■■□□□ 1.49
IFT140Q96RY7 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC24.33■■□□□ 1.49
IFT140Q96RY7 GOLGA2P7-209ENST00000560408 745 ntBASIC24.33■■□□□ 1.49
IFT140Q96RY7 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC24.33■■□□□ 1.49
IFT140Q96RY7 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
IFT140Q96RY7 ACE-203ENST00000413513 2237 ntTSL 2 BASIC24.33■■□□□ 1.49
IFT140Q96RY7 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
IFT140Q96RY7 F10-203ENST00000409306 1450 ntTSL 3 BASIC24.33■■□□□ 1.49
IFT140Q96RY7 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
IFT140Q96RY7 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
IFT140Q96RY7 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC24.33■■□□□ 1.48
IFT140Q96RY7 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
IFT140Q96RY7 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
IFT140Q96RY7 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC24.32■■□□□ 1.48
IFT140Q96RY7 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC24.32■■□□□ 1.48
IFT140Q96RY7 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC24.32■■□□□ 1.48
IFT140Q96RY7 AP000769.1-203ENST00000637245 208 ntBASIC24.32■■□□□ 1.48
IFT140Q96RY7 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
IFT140Q96RY7 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC24.32■■□□□ 1.48
IFT140Q96RY7 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
IFT140Q96RY7 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
IFT140Q96RY7 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
IFT140Q96RY7 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
IFT140Q96RY7 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
IFT140Q96RY7 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
IFT140Q96RY7 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
IFT140Q96RY7 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
IFT140Q96RY7 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC24.32■■□□□ 1.48
IFT140Q96RY7 KLHL7-204ENST00000410047 1233 ntTSL 5 BASIC24.32■■□□□ 1.48
IFT140Q96RY7 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
IFT140Q96RY7 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
IFT140Q96RY7 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC24.32■■□□□ 1.48
IFT140Q96RY7 NAA40-205ENST00000539656 577 ntTSL 4 BASIC24.32■■□□□ 1.48
IFT140Q96RY7 AL590235.1-201ENST00000564650 861 ntBASIC24.32■■□□□ 1.48
IFT140Q96RY7 DRG2-220ENST00000583355 891 ntTSL 3 BASIC24.32■■□□□ 1.48
IFT140Q96RY7 AC011462.4-201ENST00000616866 449 ntBASIC24.32■■□□□ 1.48
IFT140Q96RY7 AC233280.19-201ENST00000633223 136 ntBASIC24.32■■□□□ 1.48
IFT140Q96RY7 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
IFT140Q96RY7 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
IFT140Q96RY7 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms