Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 AL139094.1-201ENST00000405549 1188 ntBASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 KLF2P2-201ENST00000416807 1039 ntBASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 AC007389.4-201ENST00000454674 793 ntBASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 AC091917.2-201ENST00000505002 744 ntBASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 FUZ-207ENST00000526575 482 ntTSL 4 BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 MIR5189-201ENST00000577370 114 ntBASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 ACE3P-201ENST00000423435 1973 ntBASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 AC006058.4-201ENST00000624016 1670 ntBASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SCUBE3Q8IX30 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 AL137783.1-201ENST00000623494 1896 ntBASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 AC134312.5-201ENST00000568031 1313 ntBASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 BAATP1-201ENST00000412284 1225 ntBASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 TTTY23B-201ENST00000442790 549 ntBASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SCUBE3Q8IX30 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC16.03■□□□□ 0.16
SCUBE3Q8IX30 AL596257.1-201ENST00000641463 2694 ntBASIC16.03■□□□□ 0.16
SCUBE3Q8IX30 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SCUBE3Q8IX30 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SCUBE3Q8IX30 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SCUBE3Q8IX30 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
SCUBE3Q8IX30 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.03■□□□□ 0.16
SCUBE3Q8IX30 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SCUBE3Q8IX30 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.03■□□□□ 0.16
SCUBE3Q8IX30 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
SCUBE3Q8IX30 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SCUBE3Q8IX30 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
SCUBE3Q8IX30 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SCUBE3Q8IX30 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms