Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP3Q7Z494 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP3Q7Z494 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
NPHP3Q7Z494 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP3Q7Z494 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP3Q7Z494 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
NPHP3Q7Z494 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP3Q7Z494 TLE1P1-201ENST00000422965 589 ntBASIC20.29■□□□□ 0.84
NPHP3Q7Z494 TSPY25P-201ENST00000429463 745 ntBASIC20.29■□□□□ 0.84
NPHP3Q7Z494 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP3Q7Z494 XBP1P1-201ENST00000436573 652 ntBASIC20.29■□□□□ 0.84
NPHP3Q7Z494 FTH1P22-201ENST00000456305 520 ntBASIC20.29■□□□□ 0.84
NPHP3Q7Z494 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC20.29■□□□□ 0.84
NPHP3Q7Z494 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC20.29■□□□□ 0.84
NPHP3Q7Z494 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC20.29■□□□□ 0.84
NPHP3Q7Z494 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC20.29■□□□□ 0.84
NPHP3Q7Z494 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC20.29■□□□□ 0.84
NPHP3Q7Z494 AC007326.1-201ENST00000604539 458 ntBASIC20.29■□□□□ 0.84
NPHP3Q7Z494 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC20.29■□□□□ 0.84
NPHP3Q7Z494 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC20.29■□□□□ 0.84
NPHP3Q7Z494 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP3Q7Z494 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP3Q7Z494 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC20.29■□□□□ 0.84
NPHP3Q7Z494 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP3Q7Z494 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC20.29■□□□□ 0.84
NPHP3Q7Z494 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC20.29■□□□□ 0.84
NPHP3Q7Z494 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP3Q7Z494 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP3Q7Z494 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
NPHP3Q7Z494 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC20.29■□□□□ 0.84
NPHP3Q7Z494 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP3Q7Z494 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP3Q7Z494 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP3Q7Z494 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC20.29■□□□□ 0.84
NPHP3Q7Z494 AC003102.2-201ENST00000589195 1469 ntBASIC20.29■□□□□ 0.84
NPHP3Q7Z494 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP3Q7Z494 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC20.29■□□□□ 0.84
NPHP3Q7Z494 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC20.29■□□□□ 0.84
NPHP3Q7Z494 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP3Q7Z494 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
NPHP3Q7Z494 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP3Q7Z494 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP3Q7Z494 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC20.28■□□□□ 0.84
NPHP3Q7Z494 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP3Q7Z494 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP3Q7Z494 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
NPHP3Q7Z494 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC20.28■□□□□ 0.84
NPHP3Q7Z494 MRPL22P1-201ENST00000505398 616 ntBASIC20.28■□□□□ 0.84
NPHP3Q7Z494 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
NPHP3Q7Z494 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC20.28■□□□□ 0.84
NPHP3Q7Z494 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC20.28■□□□□ 0.84
NPHP3Q7Z494 DDX5-235ENST00000630471 473 ntTSL 4 BASIC20.28■□□□□ 0.84
NPHP3Q7Z494 AP001184.1-201ENST00000637936 376 ntBASIC20.28■□□□□ 0.84
NPHP3Q7Z494 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP3Q7Z494 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
NPHP3Q7Z494 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP3Q7Z494 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC20.28■□□□□ 0.84
NPHP3Q7Z494 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
NPHP3Q7Z494 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
NPHP3Q7Z494 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
NPHP3Q7Z494 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP3Q7Z494 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC20.28■□□□□ 0.84
NPHP3Q7Z494 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC20.28■□□□□ 0.84
NPHP3Q7Z494 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC20.28■□□□□ 0.84
NPHP3Q7Z494 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP3Q7Z494 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP3Q7Z494 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP3Q7Z494 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP3Q7Z494 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP3Q7Z494 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP3Q7Z494 AL035414.1-201ENST00000451327 857 ntBASIC20.27■□□□□ 0.84
NPHP3Q7Z494 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC20.27■□□□□ 0.84
NPHP3Q7Z494 ALG1L13P-202ENST00000519320 584 ntBASIC20.27■□□□□ 0.84
NPHP3Q7Z494 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC20.27■□□□□ 0.84
NPHP3Q7Z494 AC027237.1-201ENST00000560942 655 ntBASIC20.27■□□□□ 0.84
NPHP3Q7Z494 RN7SL596P-201ENST00000582123 288 ntBASIC20.27■□□□□ 0.84
NPHP3Q7Z494 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC20.27■□□□□ 0.84
NPHP3Q7Z494 BX088702.1-201ENST00000610784 235 ntBASIC20.27■□□□□ 0.84
NPHP3Q7Z494 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
NPHP3Q7Z494 CMC2-224ENST00000630396 481 ntTSL 5 BASIC20.27■□□□□ 0.84
NPHP3Q7Z494 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC20.27■□□□□ 0.84
NPHP3Q7Z494 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP3Q7Z494 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC20.27■□□□□ 0.84
NPHP3Q7Z494 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
NPHP3Q7Z494 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP3Q7Z494 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP3Q7Z494 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC20.27■□□□□ 0.84
NPHP3Q7Z494 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP3Q7Z494 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
NPHP3Q7Z494 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC20.27■□□□□ 0.84
NPHP3Q7Z494 AC092127.1-201ENST00000567093 3455 ntBASIC20.27■□□□□ 0.84
NPHP3Q7Z494 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP3Q7Z494 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP3Q7Z494 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC20.27■□□□□ 0.84
NPHP3Q7Z494 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC20.27■□□□□ 0.84
NPHP3Q7Z494 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP3Q7Z494 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP3Q7Z494 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC20.27■□□□□ 0.84
NPHP3Q7Z494 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP3Q7Z494 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 60.4 ms