Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHROOM1Q2M3G4 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
SHROOM1Q2M3G4 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHROOM1Q2M3G4 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHROOM1Q2M3G4 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC17.61■□□□□ 0.41
SHROOM1Q2M3G4 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHROOM1Q2M3G4 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC17.61■□□□□ 0.41
SHROOM1Q2M3G4 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHROOM1Q2M3G4 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHROOM1Q2M3G4 AC004899.1-201ENST00000424687 1714 ntBASIC17.61■□□□□ 0.41
SHROOM1Q2M3G4 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.61■□□□□ 0.41
SHROOM1Q2M3G4 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHROOM1Q2M3G4 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SHROOM1Q2M3G4 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SHROOM1Q2M3G4 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SHROOM1Q2M3G4 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC17.61■□□□□ 0.41
SHROOM1Q2M3G4 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 NPPA-201ENST00000376476 728 ntTSL 3 BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 CMC1-204ENST00000423894 549 ntTSL 2 BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 ATP6V0CP2-201ENST00000469409 207 ntBASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 RN7SL774P-201ENST00000577467 290 ntBASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 RN7SL574P-201ENST00000581512 297 ntBASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 RPS15-202ENST00000585665 467 ntTSL 3 BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 AF254983.2-201ENST00000612331 135 ntBASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 AP001505.2-201ENST00000616815 443 ntBASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHROOM1Q2M3G4 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 AC008132.1-202ENST00000342005 1389 ntBASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 AL138725.1-201ENST00000407347 1314 ntBASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 NME2-201ENST00000393183 568 ntTSL 2 BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM1Q2M3G4 AC091951.1-201ENST00000512854 2465 ntBASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms