Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
TFF3Q07654 AC007787.1-201ENST00000588095 1583 ntBASIC13.39□□□□□ -0.27
TFF3Q07654 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC13.39□□□□□ -0.27
TFF3Q07654 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
TFF3Q07654 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC13.39□□□□□ -0.27
TFF3Q07654 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC13.39□□□□□ -0.27
TFF3Q07654 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
TFF3Q07654 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
TFF3Q07654 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC13.39□□□□□ -0.27
TFF3Q07654 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
TFF3Q07654 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
TFF3Q07654 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
TFF3Q07654 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC13.39□□□□□ -0.27
TFF3Q07654 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
TFF3Q07654 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC13.39□□□□□ -0.27
TFF3Q07654 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC13.39□□□□□ -0.27
TFF3Q07654 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
TFF3Q07654 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
TFF3Q07654 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
TFF3Q07654 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
TFF3Q07654 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
TFF3Q07654 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
TFF3Q07654 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
TFF3Q07654 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
TFF3Q07654 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
TFF3Q07654 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
TFF3Q07654 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC13.38□□□□□ -0.27
TFF3Q07654 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC13.38□□□□□ -0.27
TFF3Q07654 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
TFF3Q07654 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
TFF3Q07654 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
TFF3Q07654 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC13.38□□□□□ -0.27
TFF3Q07654 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
TFF3Q07654 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
TFF3Q07654 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
TFF3Q07654 DEF8-202ENST00000418391 852 ntTSL 2 BASIC13.38□□□□□ -0.27
TFF3Q07654 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC13.38□□□□□ -0.27
TFF3Q07654 ATP6V0CP2-201ENST00000469409 207 ntBASIC13.38□□□□□ -0.27
TFF3Q07654 SERPINA13P-202ENST00000478994 924 ntBASIC13.38□□□□□ -0.27
TFF3Q07654 AC044849.1-201ENST00000519737 1188 ntBASIC13.38□□□□□ -0.27
TFF3Q07654 NCK2-206ENST00000522586 490 ntTSL 5 BASIC13.38□□□□□ -0.27
TFF3Q07654 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC13.38□□□□□ -0.27
TFF3Q07654 AL603832.2-201ENST00000566195 2125 ntBASIC13.38□□□□□ -0.27
TFF3Q07654 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC13.38□□□□□ -0.27
TFF3Q07654 RN7SL713P-201ENST00000582127 302 ntBASIC13.38□□□□□ -0.27
TFF3Q07654 PPY2P-201ENST00000582808 702 ntBASIC13.38□□□□□ -0.27
TFF3Q07654 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
TFF3Q07654 AC007663.3-201ENST00000609632 465 ntBASIC13.38□□□□□ -0.27
TFF3Q07654 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC13.38□□□□□ -0.27
TFF3Q07654 AC138649.2-201ENST00000615886 705 ntBASIC13.38□□□□□ -0.27
TFF3Q07654 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
TFF3Q07654 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
TFF3Q07654 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
TFF3Q07654 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
TFF3Q07654 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
TFF3Q07654 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC13.38□□□□□ -0.27
TFF3Q07654 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
TFF3Q07654 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC13.38□□□□□ -0.27
TFF3Q07654 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC13.38□□□□□ -0.27
TFF3Q07654 ANKRD30BP2-201ENST00000435744 1610 ntBASIC13.38□□□□□ -0.27
TFF3Q07654 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC13.38□□□□□ -0.27
TFF3Q07654 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
TFF3Q07654 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
TFF3Q07654 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC13.38□□□□□ -0.27
TFF3Q07654 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
TFF3Q07654 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
TFF3Q07654 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC13.38□□□□□ -0.27
TFF3Q07654 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
TFF3Q07654 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
TFF3Q07654 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
TFF3Q07654 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC13.38□□□□□ -0.27
TFF3Q07654 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
TFF3Q07654 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
TFF3Q07654 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
TFF3Q07654 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
TFF3Q07654 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC13.38□□□□□ -0.27
TFF3Q07654 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
TFF3Q07654 NORAD-201ENST00000565493 5339 ntBASIC13.37□□□□□ -0.27
TFF3Q07654 AC126177.1-201ENST00000547829 2218 ntBASIC13.37□□□□□ -0.27
TFF3Q07654 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
TFF3Q07654 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
TFF3Q07654 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
TFF3Q07654 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
TFF3Q07654 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
TFF3Q07654 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
TFF3Q07654 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
TFF3Q07654 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
TFF3Q07654 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
TFF3Q07654 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
TFF3Q07654 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
TFF3Q07654 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
TFF3Q07654 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
TFF3Q07654 SDCCAG3P2-201ENST00000326105 1023 ntBASIC13.37□□□□□ -0.27
TFF3Q07654 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
TFF3Q07654 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC13.37□□□□□ -0.27
TFF3Q07654 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC13.37□□□□□ -0.27
TFF3Q07654 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
TFF3Q07654 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
TFF3Q07654 LSM5-207ENST00000410044 687 ntTSL 3 BASIC13.37□□□□□ -0.27
TFF3Q07654 POM121L8P-201ENST00000417732 1281 ntBASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms