Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC14.77□□□□□ -0.04
FOXA1P55317 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
FOXA1P55317 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
FOXA1P55317 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
FOXA1P55317 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
FOXA1P55317 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
FOXA1P55317 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
FOXA1P55317 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
FOXA1P55317 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
FOXA1P55317 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
FOXA1P55317 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
FOXA1P55317 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
FOXA1P55317 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC14.77□□□□□ -0.04
FOXA1P55317 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC14.77□□□□□ -0.04
FOXA1P55317 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA1P55317 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA1P55317 MIR1233-2-201ENST00000408138 82 ntBASIC14.77□□□□□ -0.05
FOXA1P55317 MIR1233-1-201ENST00000408722 82 ntBASIC14.77□□□□□ -0.05
FOXA1P55317 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC14.77□□□□□ -0.05
FOXA1P55317 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC14.77□□□□□ -0.05
FOXA1P55317 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC14.77□□□□□ -0.05
FOXA1P55317 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
FOXA1P55317 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
FOXA1P55317 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC14.77□□□□□ -0.05
FOXA1P55317 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC14.77□□□□□ -0.05
FOXA1P55317 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC14.77□□□□□ -0.05
FOXA1P55317 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA1P55317 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA1P55317 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA1P55317 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
FOXA1P55317 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA1P55317 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA1P55317 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA1P55317 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC14.77□□□□□ -0.05
FOXA1P55317 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA1P55317 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA1P55317 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC14.77□□□□□ -0.05
FOXA1P55317 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA1P55317 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA1P55317 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA1P55317 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA1P55317 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA1P55317 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
FOXA1P55317 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA1P55317 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC14.76□□□□□ -0.05
FOXA1P55317 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA1P55317 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
FOXA1P55317 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA1P55317 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA1P55317 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.76□□□□□ -0.05
FOXA1P55317 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
FOXA1P55317 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
FOXA1P55317 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA1P55317 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA1P55317 RERG-209ENST00000546331 1383 ntTSL 2 BASIC14.76□□□□□ -0.05
FOXA1P55317 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA1P55317 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA1P55317 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA1P55317 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.76□□□□□ -0.05
FOXA1P55317 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA1P55317 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA1P55317 MIR943-201ENST00000401286 94 ntBASIC14.76□□□□□ -0.05
FOXA1P55317 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.76□□□□□ -0.05
FOXA1P55317 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC14.76□□□□□ -0.05
FOXA1P55317 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.76□□□□□ -0.05
FOXA1P55317 AC004066.1-201ENST00000502488 802 ntBASIC14.76□□□□□ -0.05
FOXA1P55317 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA1P55317 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.76□□□□□ -0.05
FOXA1P55317 DUX4L27-201ENST00000554796 1261 ntBASIC14.76□□□□□ -0.05
FOXA1P55317 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.76□□□□□ -0.05
FOXA1P55317 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA1P55317 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC14.76□□□□□ -0.05
FOXA1P55317 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC14.76□□□□□ -0.05
FOXA1P55317 AC004790.1-201ENST00000612686 536 ntBASIC14.76□□□□□ -0.05
FOXA1P55317 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC14.76□□□□□ -0.05
FOXA1P55317 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA1P55317 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
FOXA1P55317 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA1P55317 OS9-204ENST00000389146 2091 ntTSL 2 BASIC14.76□□□□□ -0.05
FOXA1P55317 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA1P55317 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.76□□□□□ -0.05
FOXA1P55317 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA1P55317 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA1P55317 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC14.76□□□□□ -0.05
FOXA1P55317 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA1P55317 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA1P55317 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA1P55317 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA1P55317 HSPA7-201ENST00000445535 1927 ntBASIC14.76□□□□□ -0.05
FOXA1P55317 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA1P55317 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC14.76□□□□□ -0.05
FOXA1P55317 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA1P55317 AL137783.1-201ENST00000623494 1896 ntBASIC14.76□□□□□ -0.05
FOXA1P55317 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA1P55317 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
FOXA1P55317 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC14.75□□□□□ -0.05
FOXA1P55317 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA1P55317 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC14.75□□□□□ -0.05
FOXA1P55317 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA1P55317 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms