Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A4P53420 AL157792.1-201ENST00000488281 530 ntBASIC15.89■□□□□ 0.13
COL4A4P53420 NSD1-211ENST00000511258 809 ntTSL 3 BASIC15.89■□□□□ 0.13
COL4A4P53420 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
COL4A4P53420 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
COL4A4P53420 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC15.89■□□□□ 0.13
COL4A4P53420 DUX4L46-201ENST00000566845 751 ntBASIC15.89■□□□□ 0.13
COL4A4P53420 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC15.89■□□□□ 0.13
COL4A4P53420 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC15.89■□□□□ 0.13
COL4A4P53420 AC107464.3-201ENST00000609172 737 ntBASIC15.89■□□□□ 0.13
COL4A4P53420 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A4P53420 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A4P53420 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
COL4A4P53420 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A4P53420 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A4P53420 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC15.89■□□□□ 0.13
COL4A4P53420 ZBED1P1-201ENST00000502364 1930 ntBASIC15.89■□□□□ 0.13
COL4A4P53420 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A4P53420 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
COL4A4P53420 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A4P53420 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
COL4A4P53420 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC15.89■□□□□ 0.13
COL4A4P53420 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A4P53420 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
COL4A4P53420 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
COL4A4P53420 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
COL4A4P53420 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A4P53420 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A4P53420 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC15.89■□□□□ 0.13
COL4A4P53420 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC15.89■□□□□ 0.13
COL4A4P53420 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A4P53420 RNA5SP359-201ENST00000364838 113 ntBASIC15.89■□□□□ 0.13
COL4A4P53420 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC15.89■□□□□ 0.13
COL4A4P53420 FAM58BP-201ENST00000439056 645 ntBASIC15.89■□□□□ 0.13
COL4A4P53420 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC15.89■□□□□ 0.13
COL4A4P53420 RN7SL258P-201ENST00000478664 300 ntBASIC15.89■□□□□ 0.13
COL4A4P53420 PAM16-211ENST00000575848 518 ntTSL 3 BASIC15.89■□□□□ 0.13
COL4A4P53420 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
COL4A4P53420 MIR6858-201ENST00000620733 67 ntBASIC15.89■□□□□ 0.13
COL4A4P53420 AC025262.2-201ENST00000623975 1056 ntBASIC15.89■□□□□ 0.13
COL4A4P53420 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.89■□□□□ 0.13
COL4A4P53420 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
COL4A4P53420 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL4A4P53420 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC15.88■□□□□ 0.13
COL4A4P53420 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL4A4P53420 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC15.88■□□□□ 0.13
COL4A4P53420 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
COL4A4P53420 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC15.88■□□□□ 0.13
COL4A4P53420 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL4A4P53420 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL4A4P53420 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL4A4P53420 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL4A4P53420 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL4A4P53420 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL4A4P53420 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL4A4P53420 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC15.88■□□□□ 0.13
COL4A4P53420 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC15.88■□□□□ 0.13
COL4A4P53420 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL4A4P53420 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL4A4P53420 NCR3-202ENST00000376071 541 ntTSL 5 BASIC15.88■□□□□ 0.13
COL4A4P53420 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL4A4P53420 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC15.88■□□□□ 0.13
COL4A4P53420 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL4A4P53420 POLD4-208ENST00000532830 904 ntTSL 3 BASIC15.88■□□□□ 0.13
COL4A4P53420 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC15.88■□□□□ 0.13
COL4A4P53420 AL161773.1-201ENST00000624845 863 ntBASIC15.88■□□□□ 0.13
COL4A4P53420 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC15.88■□□□□ 0.13
COL4A4P53420 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL4A4P53420 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL4A4P53420 AC132872.4-202ENST00000622924 2756 ntBASIC15.88■□□□□ 0.13
COL4A4P53420 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL4A4P53420 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC15.88■□□□□ 0.13
COL4A4P53420 MECR-202ENST00000373791 2416 ntTSL 2 BASIC15.88■□□□□ 0.13
COL4A4P53420 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL4A4P53420 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC15.88■□□□□ 0.13
COL4A4P53420 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL4A4P53420 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC15.87■□□□□ 0.13
COL4A4P53420 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL4A4P53420 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC15.87■□□□□ 0.13
COL4A4P53420 AC090502.4-201ENST00000551714 1386 ntBASIC15.87■□□□□ 0.13
COL4A4P53420 PAUPAR-201ENST00000630360 2965 ntBASIC15.87■□□□□ 0.13
COL4A4P53420 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC15.87■□□□□ 0.13
COL4A4P53420 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL4A4P53420 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC15.87■□□□□ 0.13
COL4A4P53420 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC15.87■□□□□ 0.13
COL4A4P53420 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL4A4P53420 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL4A4P53420 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.87■□□□□ 0.13
COL4A4P53420 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL4A4P53420 AL627231.1-201ENST00000394467 1125 ntBASIC15.87■□□□□ 0.13
COL4A4P53420 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC15.87■□□□□ 0.13
COL4A4P53420 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC15.87■□□□□ 0.13
COL4A4P53420 NAT9-220ENST00000582870 896 ntTSL 5 BASIC15.87■□□□□ 0.13
COL4A4P53420 AL132780.4-201ENST00000624870 1135 ntBASIC15.87■□□□□ 0.13
COL4A4P53420 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL4A4P53420 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
COL4A4P53420 AC006058.4-201ENST00000624016 1670 ntBASIC15.87■□□□□ 0.13
COL4A4P53420 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC15.87■□□□□ 0.13
COL4A4P53420 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
COL4A4P53420 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 71.8 ms