Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTPN9P43378 BAATP1-201ENST00000412284 1225 ntBASIC15.81■□□□□ 0.12
PTPN9P43378 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC15.81■□□□□ 0.12
PTPN9P43378 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
PTPN9P43378 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTPN9P43378 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTPN9P43378 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC15.81■□□□□ 0.12
PTPN9P43378 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC15.81■□□□□ 0.12
PTPN9P43378 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PTPN9P43378 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTPN9P43378 RN7SL837P-201ENST00000463010 287 ntBASIC15.81■□□□□ 0.12
PTPN9P43378 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
PTPN9P43378 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC15.81■□□□□ 0.12
PTPN9P43378 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PTPN9P43378 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC15.81■□□□□ 0.12
PTPN9P43378 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PTPN9P43378 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC15.81■□□□□ 0.12
PTPN9P43378 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
PTPN9P43378 AP005018.1-201ENST00000525475 301 ntBASIC15.81■□□□□ 0.12
PTPN9P43378 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
PTPN9P43378 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC15.81■□□□□ 0.12
PTPN9P43378 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC15.81■□□□□ 0.12
PTPN9P43378 PTP4A1P2-201ENST00000546033 454 ntBASIC15.81■□□□□ 0.12
PTPN9P43378 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC15.81■□□□□ 0.12
PTPN9P43378 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC15.81■□□□□ 0.12
PTPN9P43378 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC15.81■□□□□ 0.12
PTPN9P43378 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC15.81■□□□□ 0.12
PTPN9P43378 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
PTPN9P43378 AC055811.4-201ENST00000624039 1754 ntBASIC15.81■□□□□ 0.12
PTPN9P43378 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
PTPN9P43378 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC15.8■□□□□ 0.12
PTPN9P43378 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
PTPN9P43378 AC018442.1-201ENST00000421439 2061 ntBASIC15.8■□□□□ 0.12
PTPN9P43378 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC15.8■□□□□ 0.12
PTPN9P43378 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN9P43378 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
PTPN9P43378 MSTO2P-201ENST00000314835 1709 ntBASIC15.8■□□□□ 0.12
PTPN9P43378 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
PTPN9P43378 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN9P43378 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN9P43378 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN9P43378 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN9P43378 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
PTPN9P43378 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
PTPN9P43378 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC15.8■□□□□ 0.12
PTPN9P43378 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN9P43378 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC15.8■□□□□ 0.12
PTPN9P43378 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
PTPN9P43378 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC15.8■□□□□ 0.12
PTPN9P43378 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
PTPN9P43378 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC15.8■□□□□ 0.12
PTPN9P43378 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC15.8■□□□□ 0.12
PTPN9P43378 AC026434.2-201ENST00000506094 1078 ntBASIC15.8■□□□□ 0.12
PTPN9P43378 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC15.8■□□□□ 0.12
PTPN9P43378 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC15.8■□□□□ 0.12
PTPN9P43378 AC068587.3-201ENST00000526613 355 ntBASIC15.8■□□□□ 0.12
PTPN9P43378 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC15.8■□□□□ 0.12
PTPN9P43378 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
PTPN9P43378 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
PTPN9P43378 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
PTPN9P43378 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
PTPN9P43378 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC15.8■□□□□ 0.12
PTPN9P43378 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN9P43378 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC15.8■□□□□ 0.12
PTPN9P43378 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN9P43378 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN9P43378 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
PTPN9P43378 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
PTPN9P43378 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN9P43378 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
PTPN9P43378 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN9P43378 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN9P43378 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN9P43378 CICP14-201ENST00000629111 2732 ntBASIC15.8■□□□□ 0.12
PTPN9P43378 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
PTPN9P43378 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC15.8■□□□□ 0.12
PTPN9P43378 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN9P43378 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC15.79■□□□□ 0.12
PTPN9P43378 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC15.79■□□□□ 0.12
PTPN9P43378 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC15.79■□□□□ 0.12
PTPN9P43378 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN9P43378 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN9P43378 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN9P43378 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN9P43378 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN9P43378 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN9P43378 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
PTPN9P43378 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
PTPN9P43378 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
PTPN9P43378 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN9P43378 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
PTPN9P43378 AL390755.1-201ENST00000623716 2027 ntBASIC15.79■□□□□ 0.12
PTPN9P43378 AC134312.5-201ENST00000568031 1313 ntBASIC15.79■□□□□ 0.12
PTPN9P43378 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
PTPN9P43378 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN9P43378 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC15.79■□□□□ 0.12
PTPN9P43378 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN9P43378 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN9P43378 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC15.79■□□□□ 0.12
PTPN9P43378 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 75.7 ms