Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
PTPN4P29074 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN4P29074 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN4P29074 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN4P29074 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC15.41■□□□□ 0.06
PTPN4P29074 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC15.41■□□□□ 0.06
PTPN4P29074 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN4P29074 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC15.4■□□□□ 0.06
PTPN4P29074 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN4P29074 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC15.4■□□□□ 0.06
PTPN4P29074 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN4P29074 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
PTPN4P29074 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN4P29074 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
PTPN4P29074 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN4P29074 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN4P29074 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN4P29074 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
PTPN4P29074 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN4P29074 INTS4P1-203ENST00000641008 3683 ntBASIC15.4■□□□□ 0.06
PTPN4P29074 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN4P29074 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN4P29074 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
PTPN4P29074 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN4P29074 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN4P29074 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN4P29074 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN4P29074 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC15.4■□□□□ 0.06
PTPN4P29074 GAPDHP21-201ENST00000450301 1010 ntBASIC15.4■□□□□ 0.06
PTPN4P29074 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC15.4■□□□□ 0.06
PTPN4P29074 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN4P29074 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN4P29074 AC105021.1-202ENST00000570572 669 ntBASIC15.4■□□□□ 0.06
PTPN4P29074 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
PTPN4P29074 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC15.4■□□□□ 0.06
PTPN4P29074 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC15.4■□□□□ 0.06
PTPN4P29074 TEX28P1-201ENST00000613479 1221 ntBASIC15.4■□□□□ 0.06
PTPN4P29074 TEX28P2-201ENST00000617764 1221 ntBASIC15.4■□□□□ 0.06
PTPN4P29074 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN4P29074 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN4P29074 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC15.4■□□□□ 0.06
PTPN4P29074 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN4P29074 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
PTPN4P29074 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC15.4■□□□□ 0.06
PTPN4P29074 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
PTPN4P29074 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN4P29074 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
PTPN4P29074 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN4P29074 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN4P29074 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC15.4■□□□□ 0.06
PTPN4P29074 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
PTPN4P29074 AC087499.5-201ENST00000452760 1342 ntBASIC15.4■□□□□ 0.06
PTPN4P29074 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
PTPN4P29074 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN4P29074 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC15.4■□□□□ 0.06
PTPN4P29074 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN4P29074 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN4P29074 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN4P29074 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.4■□□□□ 0.06
PTPN4P29074 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.4■□□□□ 0.06
PTPN4P29074 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.4■□□□□ 0.06
PTPN4P29074 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC15.39■□□□□ 0.06
PTPN4P29074 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN4P29074 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN4P29074 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN4P29074 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC15.39■□□□□ 0.05
PTPN4P29074 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
PTPN4P29074 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN4P29074 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN4P29074 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN4P29074 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN4P29074 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC15.39■□□□□ 0.05
PTPN4P29074 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN4P29074 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
PTPN4P29074 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
PTPN4P29074 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC15.39■□□□□ 0.05
PTPN4P29074 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN4P29074 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN4P29074 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN4P29074 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN4P29074 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN4P29074 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC15.39■□□□□ 0.05
PTPN4P29074 GSAP-205ENST00000430584 600 ntTSL 5 BASIC15.39■□□□□ 0.05
PTPN4P29074 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN4P29074 AC093724.1-201ENST00000448659 1027 ntBASIC15.39■□□□□ 0.05
PTPN4P29074 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN4P29074 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN4P29074 REEP4-207ENST00000523293 913 ntTSL 3 BASIC15.39■□□□□ 0.05
PTPN4P29074 AP005018.1-201ENST00000525475 301 ntBASIC15.39■□□□□ 0.05
PTPN4P29074 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC15.39■□□□□ 0.05
PTPN4P29074 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC15.39■□□□□ 0.05
PTPN4P29074 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC15.39■□□□□ 0.05
PTPN4P29074 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN4P29074 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC15.39■□□□□ 0.05
PTPN4P29074 AL662799.1-202ENST00000614205 422 ntBASIC15.39■□□□□ 0.05
PTPN4P29074 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC15.39■□□□□ 0.05
PTPN4P29074 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN4P29074 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN4P29074 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTPN4P29074 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms