Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
APOEP02649 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
APOEP02649 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
APOEP02649 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
APOEP02649 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC16.03■□□□□ 0.16
APOEP02649 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC16.03■□□□□ 0.16
APOEP02649 PARN-202ENST00000420015 2360 ntTSL 2 BASIC16.02■□□□□ 0.16
APOEP02649 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC16.02■□□□□ 0.16
APOEP02649 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
APOEP02649 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
APOEP02649 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
APOEP02649 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC16.02■□□□□ 0.16
APOEP02649 AL138799.1-201ENST00000448213 1675 ntBASIC16.02■□□□□ 0.16
APOEP02649 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
APOEP02649 POR-201ENST00000394893 2532 ntTSL 5 BASIC16.02■□□□□ 0.16
APOEP02649 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
APOEP02649 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
APOEP02649 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
APOEP02649 APOA1-205ENST00000375329 927 ntTSL 2 BASIC16.02■□□□□ 0.16
APOEP02649 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
APOEP02649 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
APOEP02649 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC16.02■□□□□ 0.16
APOEP02649 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC16.02■□□□□ 0.16
APOEP02649 TTTY23B-201ENST00000442790 549 ntBASIC16.02■□□□□ 0.16
APOEP02649 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC16.02■□□□□ 0.16
APOEP02649 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC16.02■□□□□ 0.16
APOEP02649 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC16.02■□□□□ 0.16
APOEP02649 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC16.02■□□□□ 0.16
APOEP02649 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC16.02■□□□□ 0.16
APOEP02649 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC16.02■□□□□ 0.16
APOEP02649 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC16.02■□□□□ 0.16
APOEP02649 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC16.02■□□□□ 0.16
APOEP02649 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC16.02■□□□□ 0.16
APOEP02649 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC16.02■□□□□ 0.16
APOEP02649 METTL26-214ENST00000614890 801 ntTSL 3 BASIC16.02■□□□□ 0.16
APOEP02649 ABBA01031660.1-201ENST00000635219 756 ntBASIC16.02■□□□□ 0.16
APOEP02649 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC16.02■□□□□ 0.15
APOEP02649 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
APOEP02649 AC126365.1-201ENST00000578585 1514 ntBASIC16.02■□□□□ 0.15
APOEP02649 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.15
APOEP02649 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
APOEP02649 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
APOEP02649 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
APOEP02649 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
APOEP02649 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
APOEP02649 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
APOEP02649 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
APOEP02649 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.15
APOEP02649 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC16.02■□□□□ 0.15
APOEP02649 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
APOEP02649 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC16.02■□□□□ 0.15
APOEP02649 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
APOEP02649 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
APOEP02649 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
APOEP02649 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
APOEP02649 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
APOEP02649 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC16.01■□□□□ 0.15
APOEP02649 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
APOEP02649 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
APOEP02649 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
APOEP02649 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
APOEP02649 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
APOEP02649 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
APOEP02649 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
APOEP02649 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC16.01■□□□□ 0.15
APOEP02649 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
APOEP02649 AC004066.1-201ENST00000502488 802 ntBASIC16.01■□□□□ 0.15
APOEP02649 AP001582.1-201ENST00000525856 295 ntBASIC16.01■□□□□ 0.15
APOEP02649 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC16.01■□□□□ 0.15
APOEP02649 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC16.01■□□□□ 0.15
APOEP02649 AC132938.2-201ENST00000579188 680 ntBASIC16.01■□□□□ 0.15
APOEP02649 AC010319.3-201ENST00000597028 470 ntBASIC16.01■□□□□ 0.15
APOEP02649 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC16.01■□□□□ 0.15
APOEP02649 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
APOEP02649 IGHV3-72-202ENST00000621503 303 ntBASIC16.01■□□□□ 0.15
APOEP02649 AL591163.1-201ENST00000641757 987 ntBASIC16.01■□□□□ 0.15
APOEP02649 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC16.01■□□□□ 0.15
APOEP02649 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
APOEP02649 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
APOEP02649 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
APOEP02649 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
APOEP02649 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC16.01■□□□□ 0.15
APOEP02649 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC16.01■□□□□ 0.15
APOEP02649 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC16.01■□□□□ 0.15
APOEP02649 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC16.01■□□□□ 0.15
APOEP02649 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
APOEP02649 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
APOEP02649 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
APOEP02649 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC16■□□□□ 0.15
APOEP02649 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC16■□□□□ 0.15
APOEP02649 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC16■□□□□ 0.15
APOEP02649 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
APOEP02649 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
APOEP02649 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC16■□□□□ 0.15
APOEP02649 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC16■□□□□ 0.15
APOEP02649 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
APOEP02649 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC16■□□□□ 0.15
APOEP02649 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
APOEP02649 CICP24-201ENST00000605464 2705 ntBASIC16■□□□□ 0.15
APOEP02649 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms