Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA1O95477 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA1O95477 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA1O95477 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC12.86□□□□□ -0.35
ABCA1O95477 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC12.86□□□□□ -0.35
ABCA1O95477 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA1O95477 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC12.86□□□□□ -0.35
ABCA1O95477 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA1O95477 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC12.86□□□□□ -0.35
ABCA1O95477 UPF3AP2-201ENST00000457924 1132 ntBASIC12.86□□□□□ -0.35
ABCA1O95477 APOA2-204ENST00000464492 530 ntTSL 3 BASIC12.86□□□□□ -0.35
ABCA1O95477 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC12.86□□□□□ -0.35
ABCA1O95477 NAT9-222ENST00000583476 583 ntTSL 3 BASIC12.86□□□□□ -0.35
ABCA1O95477 AC145423.3-201ENST00000615987 467 ntBASIC12.86□□□□□ -0.35
ABCA1O95477 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
ABCA1O95477 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA1O95477 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA1O95477 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA1O95477 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC12.86□□□□□ -0.35
ABCA1O95477 AC006449.6-201ENST00000612330 2296 ntBASIC12.86□□□□□ -0.35
ABCA1O95477 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC12.86□□□□□ -0.35
ABCA1O95477 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
ABCA1O95477 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC12.86□□□□□ -0.35
ABCA1O95477 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA1O95477 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA1O95477 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC12.86□□□□□ -0.35
ABCA1O95477 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC12.86□□□□□ -0.35
ABCA1O95477 AP001282.1-201ENST00000531301 1499 ntBASIC12.86□□□□□ -0.35
ABCA1O95477 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC12.86□□□□□ -0.35
ABCA1O95477 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA1O95477 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA1O95477 HNRNPA1P32-201ENST00000396326 963 ntBASIC12.86□□□□□ -0.35
ABCA1O95477 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA1O95477 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC12.86□□□□□ -0.35
ABCA1O95477 RPS2P36-201ENST00000456516 831 ntBASIC12.86□□□□□ -0.35
ABCA1O95477 TSACC-208ENST00000481479 741 ntTSL 2 BASIC12.86□□□□□ -0.35
ABCA1O95477 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC12.86□□□□□ -0.35
ABCA1O95477 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC12.86□□□□□ -0.35
ABCA1O95477 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA1O95477 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA1O95477 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC12.86□□□□□ -0.35
ABCA1O95477 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC12.86□□□□□ -0.35
ABCA1O95477 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC12.86□□□□□ -0.35
ABCA1O95477 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC12.86□□□□□ -0.35
ABCA1O95477 NORAD-201ENST00000565493 5339 ntBASIC12.86□□□□□ -0.35
ABCA1O95477 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA1O95477 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC12.85□□□□□ -0.35
ABCA1O95477 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
ABCA1O95477 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
ABCA1O95477 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC12.85□□□□□ -0.35
ABCA1O95477 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
ABCA1O95477 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC12.85□□□□□ -0.35
ABCA1O95477 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC12.85□□□□□ -0.35
ABCA1O95477 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC12.85□□□□□ -0.35
ABCA1O95477 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC12.85□□□□□ -0.35
ABCA1O95477 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
ABCA1O95477 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
ABCA1O95477 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
ABCA1O95477 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
ABCA1O95477 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC12.85□□□□□ -0.35
ABCA1O95477 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC12.85□□□□□ -0.35
ABCA1O95477 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC12.85□□□□□ -0.35
ABCA1O95477 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
ABCA1O95477 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC12.85□□□□□ -0.35
ABCA1O95477 AP006547.1-201ENST00000563435 692 ntBASIC12.85□□□□□ -0.35
ABCA1O95477 CMC2-214ENST00000565925 640 ntTSL 5 BASIC12.85□□□□□ -0.35
ABCA1O95477 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC12.85□□□□□ -0.35
ABCA1O95477 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC12.85□□□□□ -0.35
ABCA1O95477 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
ABCA1O95477 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC12.85□□□□□ -0.35
ABCA1O95477 SPCS2P2-201ENST00000603270 608 ntBASIC12.85□□□□□ -0.35
ABCA1O95477 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
ABCA1O95477 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
ABCA1O95477 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC12.85□□□□□ -0.35
ABCA1O95477 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
ABCA1O95477 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
ABCA1O95477 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC12.85□□□□□ -0.35
ABCA1O95477 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
ABCA1O95477 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC12.85□□□□□ -0.35
ABCA1O95477 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
ABCA1O95477 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
ABCA1O95477 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC12.85□□□□□ -0.35
ABCA1O95477 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC12.85□□□□□ -0.35
ABCA1O95477 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
ABCA1O95477 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC12.85□□□□□ -0.35
ABCA1O95477 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
ABCA1O95477 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC12.85□□□□□ -0.35
ABCA1O95477 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC12.85□□□□□ -0.35
ABCA1O95477 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC12.85□□□□□ -0.35
ABCA1O95477 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
ABCA1O95477 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
ABCA1O95477 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
ABCA1O95477 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC12.85□□□□□ -0.35
ABCA1O95477 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC12.85□□□□□ -0.35
ABCA1O95477 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
ABCA1O95477 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
ABCA1O95477 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
ABCA1O95477 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
ABCA1O95477 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
ABCA1O95477 FNTAP2-201ENST00000430308 634 ntBASIC12.85□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms