Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
FOXN3O00409 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC16.33■□□□□ 0.2
FOXN3O00409 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
FOXN3O00409 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXN3O00409 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXN3O00409 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXN3O00409 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC16.32■□□□□ 0.2
FOXN3O00409 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXN3O00409 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
FOXN3O00409 SNX18-202ENST00000343017 3140 ntBASIC16.32■□□□□ 0.2
FOXN3O00409 AC139749.1-202ENST00000617529 3139 ntBASIC16.32■□□□□ 0.2
FOXN3O00409 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXN3O00409 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXN3O00409 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
FOXN3O00409 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXN3O00409 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXN3O00409 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXN3O00409 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXN3O00409 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXN3O00409 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXN3O00409 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXN3O00409 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC16.32■□□□□ 0.2
FOXN3O00409 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXN3O00409 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXN3O00409 TEX30-203ENST00000376022 828 ntTSL 2 BASIC16.32■□□□□ 0.2
FOXN3O00409 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
FOXN3O00409 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC16.32■□□□□ 0.2
FOXN3O00409 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
FOXN3O00409 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC16.32■□□□□ 0.2
FOXN3O00409 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
FOXN3O00409 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC16.32■□□□□ 0.2
FOXN3O00409 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC16.32■□□□□ 0.2
FOXN3O00409 BCRP1-201ENST00000444246 691 ntBASIC16.32■□□□□ 0.2
FOXN3O00409 GALT-202ENST00000450095 1280 ntTSL 2 BASIC16.32■□□□□ 0.2
FOXN3O00409 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
FOXN3O00409 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC16.32■□□□□ 0.2
FOXN3O00409 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
FOXN3O00409 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
FOXN3O00409 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC16.32■□□□□ 0.2
FOXN3O00409 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXN3O00409 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC16.32■□□□□ 0.2
FOXN3O00409 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC16.32■□□□□ 0.2
FOXN3O00409 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
FOXN3O00409 SPDYE22P-201ENST00000582158 798 ntBASIC16.32■□□□□ 0.2
FOXN3O00409 AL132655.2-201ENST00000596276 594 ntBASIC16.32■□□□□ 0.2
FOXN3O00409 LINC02560-201ENST00000596379 459 ntBASIC16.32■□□□□ 0.2
FOXN3O00409 AL096865.1-201ENST00000606796 927 ntBASIC16.32■□□□□ 0.2
FOXN3O00409 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXN3O00409 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC16.32■□□□□ 0.2
FOXN3O00409 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
FOXN3O00409 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
FOXN3O00409 AC007191.1-201ENST00000623179 2995 ntBASIC16.32■□□□□ 0.2
FOXN3O00409 PKD1P5-201ENST00000532415 10291 ntBASIC16.32■□□□□ 0.2
FOXN3O00409 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXN3O00409 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXN3O00409 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC16.32■□□□□ 0.2
FOXN3O00409 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXN3O00409 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXN3O00409 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
FOXN3O00409 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
FOXN3O00409 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
FOXN3O00409 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
FOXN3O00409 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXN3O00409 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
FOXN3O00409 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXN3O00409 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXN3O00409 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC16.31■□□□□ 0.2
FOXN3O00409 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC16.31■□□□□ 0.2
FOXN3O00409 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC16.31■□□□□ 0.2
FOXN3O00409 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
FOXN3O00409 KRT8P22-201ENST00000562317 1415 ntBASIC16.31■□□□□ 0.2
FOXN3O00409 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
FOXN3O00409 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
FOXN3O00409 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC16.31■□□□□ 0.2
FOXN3O00409 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXN3O00409 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXN3O00409 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXN3O00409 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXN3O00409 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
FOXN3O00409 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC16.31■□□□□ 0.2
FOXN3O00409 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC16.31■□□□□ 0.2
FOXN3O00409 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
FOXN3O00409 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC16.31■□□□□ 0.2
FOXN3O00409 AC124283.3-201ENST00000570869 594 ntBASIC16.31■□□□□ 0.2
FOXN3O00409 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC16.31■□□□□ 0.2
FOXN3O00409 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC16.31■□□□□ 0.2
FOXN3O00409 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC16.31■□□□□ 0.2
FOXN3O00409 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC16.31■□□□□ 0.2
FOXN3O00409 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC16.31■□□□□ 0.2
FOXN3O00409 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXN3O00409 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
FOXN3O00409 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
FOXN3O00409 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXN3O00409 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXN3O00409 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
FOXN3O00409 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXN3O00409 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
FOXN3O00409 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
FOXN3O00409 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
FOXN3O00409 INTS4P1-203ENST00000641008 3683 ntBASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms