Protein–RNA interactions for Protein: Q6P9H4

CNKSR3, Connector enhancer of kinase suppressor of ras 3, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3Q6P9H4 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC16.19■□□□□ 0.18
CNKSR3Q6P9H4 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC16.19■□□□□ 0.18
CNKSR3Q6P9H4 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
CNKSR3Q6P9H4 RN7SL67P-201ENST00000492147 296 ntBASIC16.19■□□□□ 0.18
CNKSR3Q6P9H4 ALG3P1-201ENST00000508806 1114 ntBASIC16.19■□□□□ 0.18
CNKSR3Q6P9H4 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
CNKSR3Q6P9H4 CFL1-206ENST00000527344 962 ntTSL 2 BASIC16.19■□□□□ 0.18
CNKSR3Q6P9H4 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CNKSR3Q6P9H4 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC16.19■□□□□ 0.18
CNKSR3Q6P9H4 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC16.19■□□□□ 0.18
CNKSR3Q6P9H4 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
CNKSR3Q6P9H4 AC135983.4-201ENST00000564116 1262 ntBASIC16.19■□□□□ 0.18
CNKSR3Q6P9H4 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
CNKSR3Q6P9H4 HLA-C-210ENST00000640219 976 ntBASIC16.19■□□□□ 0.18
CNKSR3Q6P9H4 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CNKSR3Q6P9H4 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CNKSR3Q6P9H4 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CNKSR3Q6P9H4 AC136759.1-202ENST00000530858 2194 ntBASIC16.19■□□□□ 0.18
CNKSR3Q6P9H4 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 CICP13-201ENST00000422015 2789 ntBASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 OR2K2-202ENST00000374428 1038 ntBASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 AC114501.1-201ENST00000445949 172 ntBASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 AC026803.1-201ENST00000569130 274 ntBASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 PCDH8P1-201ENST00000428983 2773 ntBASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 AC020916.1-201ENST00000587762 1774 ntBASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 AC074138.1-201ENST00000611182 1303 ntBASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC16.18■□□□□ 0.18
CNKSR3Q6P9H4 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 TLE1P1-201ENST00000422965 589 ntBASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 AC008723.1-201ENST00000506922 207 ntBASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 AL031713.1-201ENST00000564813 661 ntBASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 AL157813.1-201ENST00000612996 587 ntBASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 AC007718.1-201ENST00000621078 280 ntBASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 CYP2T1P-202ENST00000641596 2535 ntBASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC16.17■□□□□ 0.18
CNKSR3Q6P9H4 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC16.16■□□□□ 0.18
CNKSR3Q6P9H4 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC16.16■□□□□ 0.18
CNKSR3Q6P9H4 STK33-217ENST00000534493 1895 ntTSL 2 BASIC16.16■□□□□ 0.18
CNKSR3Q6P9H4 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CNKSR3Q6P9H4 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CNKSR3Q6P9H4 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CNKSR3Q6P9H4 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CNKSR3Q6P9H4 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CNKSR3Q6P9H4 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms