Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 MIR4313-201ENST00000580760 101 ntBASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 GPR182-203ENST00000622922 591 ntBASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 AC084121.4-201ENST00000641598 221 ntBASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 AF228730.8-201ENST00000642140 221 ntBASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 AC092127.1-201ENST00000567093 3455 ntBASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
PDLIM3Q53GG5 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 POR-201ENST00000394893 2532 ntTSL 5 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 AL353779.1-201ENST00000434793 351 ntBASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 MIR4538-201ENST00000581377 78 ntBASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 RN7SL190P-201ENST00000582519 257 ntBASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 AKAP8P1-201ENST00000434743 1349 ntBASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 AC100757.3-201ENST00000622361 1406 ntBASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 REXO1L1P-202ENST00000608646 1974 ntBASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
PDLIM3Q53GG5 UXT-AS1-201ENST00000590504 1525 ntBASIC12.78□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms