Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC15.99■□□□□ 0.15
RB1P06400 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
RB1P06400 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC15.99■□□□□ 0.15
RB1P06400 AC009884.2-201ENST00000603110 324 ntBASIC15.99■□□□□ 0.15
RB1P06400 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
RB1P06400 HLA-C-210ENST00000640219 976 ntBASIC15.99■□□□□ 0.15
RB1P06400 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.99■□□□□ 0.15
RB1P06400 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
RB1P06400 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
RB1P06400 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC15.99■□□□□ 0.15
RB1P06400 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
RB1P06400 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
RB1P06400 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
RB1P06400 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC15.99■□□□□ 0.15
RB1P06400 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
RB1P06400 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
RB1P06400 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC15.99■□□□□ 0.15
RB1P06400 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
RB1P06400 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
RB1P06400 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
RB1P06400 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC15.98■□□□□ 0.15
RB1P06400 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
RB1P06400 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
RB1P06400 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
RB1P06400 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
RB1P06400 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
RB1P06400 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
RB1P06400 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
RB1P06400 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
RB1P06400 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
RB1P06400 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC15.98■□□□□ 0.15
RB1P06400 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC15.98■□□□□ 0.15
RB1P06400 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC15.98■□□□□ 0.15
RB1P06400 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
RB1P06400 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
RB1P06400 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
RB1P06400 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC15.98■□□□□ 0.15
RB1P06400 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC15.98■□□□□ 0.15
RB1P06400 AC114501.1-201ENST00000445949 172 ntBASIC15.98■□□□□ 0.15
RB1P06400 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
RB1P06400 RN7SL8P-201ENST00000461771 266 ntBASIC15.98■□□□□ 0.15
RB1P06400 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC15.98■□□□□ 0.15
RB1P06400 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC15.98■□□□□ 0.15
RB1P06400 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
RB1P06400 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
RB1P06400 NAT9-211ENST00000580632 799 ntTSL 3 BASIC15.98■□□□□ 0.15
RB1P06400 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC15.98■□□□□ 0.15
RB1P06400 WDR7-208ENST00000589935 544 ntTSL 4 BASIC15.98■□□□□ 0.15
RB1P06400 AL805961.1-201ENST00000642026 753 ntBASIC15.98■□□□□ 0.15
RB1P06400 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
RB1P06400 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC15.98■□□□□ 0.15
RB1P06400 AC112504.1-201ENST00000623415 1841 ntBASIC15.98■□□□□ 0.15
RB1P06400 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
RB1P06400 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC15.98■□□□□ 0.15
RB1P06400 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
RB1P06400 FAM90A7P-201ENST00000382628 1395 ntBASIC15.98■□□□□ 0.15
RB1P06400 FAM90A23P-201ENST00000400136 1395 ntBASIC15.98■□□□□ 0.15
RB1P06400 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
RB1P06400 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
RB1P06400 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
RB1P06400 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC15.98■□□□□ 0.15
RB1P06400 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC15.98■□□□□ 0.15
RB1P06400 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
RB1P06400 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
RB1P06400 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
RB1P06400 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RB1P06400 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RB1P06400 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
RB1P06400 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
RB1P06400 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RB1P06400 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RB1P06400 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RB1P06400 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
RB1P06400 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RB1P06400 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RB1P06400 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
RB1P06400 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC15.97■□□□□ 0.15
RB1P06400 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
RB1P06400 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RB1P06400 LBH-202ENST00000401506 485 ntTSL 3 BASIC15.97■□□□□ 0.15
RB1P06400 SERF2-209ENST00000409646 559 ntTSL 4 BASIC15.97■□□□□ 0.15
RB1P06400 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC15.97■□□□□ 0.15
RB1P06400 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RB1P06400 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
RB1P06400 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RB1P06400 AC087045.2-201ENST00000606279 1003 ntBASIC15.97■□□□□ 0.15
RB1P06400 AC092171.5-201ENST00000608012 942 ntBASIC15.97■□□□□ 0.15
RB1P06400 CDK7-214ENST00000626796 358 ntTSL 5 BASIC15.97■□□□□ 0.15
RB1P06400 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC15.97■□□□□ 0.15
RB1P06400 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RB1P06400 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC15.97■□□□□ 0.15
RB1P06400 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RB1P06400 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC15.97■□□□□ 0.15
RB1P06400 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
RB1P06400 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC15.97■□□□□ 0.15
RB1P06400 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RB1P06400 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RB1P06400 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RB1P06400 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC15.97■□□□□ 0.15
RB1P06400 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms