Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC28.67■■■□□ 2.18
SHROOM4Q9ULL8 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
SHROOM4Q9ULL8 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC28.67■■■□□ 2.18
SHROOM4Q9ULL8 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC28.67■■■□□ 2.18
SHROOM4Q9ULL8 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC28.67■■■□□ 2.18
SHROOM4Q9ULL8 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC28.67■■■□□ 2.18
SHROOM4Q9ULL8 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC28.67■■■□□ 2.18
SHROOM4Q9ULL8 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
SHROOM4Q9ULL8 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC28.67■■■□□ 2.18
SHROOM4Q9ULL8 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC28.67■■■□□ 2.18
SHROOM4Q9ULL8 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC28.67■■■□□ 2.18
SHROOM4Q9ULL8 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC28.67■■■□□ 2.18
SHROOM4Q9ULL8 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
SHROOM4Q9ULL8 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
SHROOM4Q9ULL8 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC28.67■■■□□ 2.18
SHROOM4Q9ULL8 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC28.67■■■□□ 2.18
SHROOM4Q9ULL8 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC28.67■■■□□ 2.18
SHROOM4Q9ULL8 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC28.67■■■□□ 2.18
SHROOM4Q9ULL8 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC28.67■■■□□ 2.18
SHROOM4Q9ULL8 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
SHROOM4Q9ULL8 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC28.66■■■□□ 2.18
SHROOM4Q9ULL8 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC28.66■■■□□ 2.18
SHROOM4Q9ULL8 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC28.66■■■□□ 2.18
SHROOM4Q9ULL8 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC28.66■■■□□ 2.18
SHROOM4Q9ULL8 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
SHROOM4Q9ULL8 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC28.66■■■□□ 2.18
SHROOM4Q9ULL8 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC28.66■■■□□ 2.18
SHROOM4Q9ULL8 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC28.66■■■□□ 2.18
SHROOM4Q9ULL8 HR-201ENST00000312841 5351 ntTSL 5 BASIC28.66■■■□□ 2.18
SHROOM4Q9ULL8 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC28.66■■■□□ 2.18
SHROOM4Q9ULL8 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
SHROOM4Q9ULL8 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC28.66■■■□□ 2.18
SHROOM4Q9ULL8 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC28.66■■■□□ 2.18
SHROOM4Q9ULL8 PAUPAR-201ENST00000630360 2965 ntBASIC28.66■■■□□ 2.18
SHROOM4Q9ULL8 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC28.66■■■□□ 2.18
SHROOM4Q9ULL8 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC28.66■■■□□ 2.18
SHROOM4Q9ULL8 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
SHROOM4Q9ULL8 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
SHROOM4Q9ULL8 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
SHROOM4Q9ULL8 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
SHROOM4Q9ULL8 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC28.66■■■□□ 2.18
SHROOM4Q9ULL8 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC28.66■■■□□ 2.18
SHROOM4Q9ULL8 DKFZP434H168-201ENST00000567381 1905 ntBASIC28.66■■■□□ 2.18
SHROOM4Q9ULL8 MIR4783-201ENST00000580343 82 ntBASIC28.66■■■□□ 2.18
SHROOM4Q9ULL8 REXO1L4P-201ENST00000605109 1937 ntBASIC28.66■■■□□ 2.18
SHROOM4Q9ULL8 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC28.65■■■□□ 2.18
SHROOM4Q9ULL8 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
SHROOM4Q9ULL8 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC28.65■■■□□ 2.18
SHROOM4Q9ULL8 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC28.65■■■□□ 2.18
SHROOM4Q9ULL8 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC28.65■■■□□ 2.18
SHROOM4Q9ULL8 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
SHROOM4Q9ULL8 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
SHROOM4Q9ULL8 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC28.65■■■□□ 2.18
SHROOM4Q9ULL8 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC28.65■■■□□ 2.18
SHROOM4Q9ULL8 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
SHROOM4Q9ULL8 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC28.65■■■□□ 2.18
SHROOM4Q9ULL8 TUBB8P8-201ENST00000458717 1058 ntBASIC28.65■■■□□ 2.18
SHROOM4Q9ULL8 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC28.65■■■□□ 2.18
SHROOM4Q9ULL8 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC28.64■■■□□ 2.18
SHROOM4Q9ULL8 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC28.64■■■□□ 2.18
SHROOM4Q9ULL8 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
SHROOM4Q9ULL8 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
SHROOM4Q9ULL8 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC28.64■■■□□ 2.18
SHROOM4Q9ULL8 ACE-204ENST00000428043 5120 ntTSL 2 BASIC28.64■■■□□ 2.18
SHROOM4Q9ULL8 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
SHROOM4Q9ULL8 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
SHROOM4Q9ULL8 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
SHROOM4Q9ULL8 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC28.64■■■□□ 2.18
SHROOM4Q9ULL8 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
SHROOM4Q9ULL8 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
SHROOM4Q9ULL8 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
SHROOM4Q9ULL8 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC28.64■■■□□ 2.18
SHROOM4Q9ULL8 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC28.64■■■□□ 2.18
SHROOM4Q9ULL8 AC097065.1-201ENST00000425737 517 ntBASIC28.64■■■□□ 2.17
SHROOM4Q9ULL8 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC28.64■■■□□ 2.17
SHROOM4Q9ULL8 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC28.64■■■□□ 2.17
SHROOM4Q9ULL8 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC28.64■■■□□ 2.17
SHROOM4Q9ULL8 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC28.64■■■□□ 2.17
SHROOM4Q9ULL8 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC28.64■■■□□ 2.17
SHROOM4Q9ULL8 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC28.63■■■□□ 2.17
SHROOM4Q9ULL8 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC28.63■■■□□ 2.17
SHROOM4Q9ULL8 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC28.63■■■□□ 2.17
SHROOM4Q9ULL8 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC28.63■■■□□ 2.17
SHROOM4Q9ULL8 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
SHROOM4Q9ULL8 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC28.63■■■□□ 2.17
SHROOM4Q9ULL8 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
SHROOM4Q9ULL8 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC28.63■■■□□ 2.17
SHROOM4Q9ULL8 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC28.63■■■□□ 2.17
SHROOM4Q9ULL8 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
SHROOM4Q9ULL8 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC28.63■■■□□ 2.17
SHROOM4Q9ULL8 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
SHROOM4Q9ULL8 EID1-202ENST00000560490 584 ntTSL 3 BASIC28.63■■■□□ 2.17
SHROOM4Q9ULL8 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC28.63■■■□□ 2.17
SHROOM4Q9ULL8 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC28.63■■■□□ 2.17
SHROOM4Q9ULL8 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC28.63■■■□□ 2.17
SHROOM4Q9ULL8 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC28.63■■■□□ 2.17
SHROOM4Q9ULL8 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC28.63■■■□□ 2.17
SHROOM4Q9ULL8 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
SHROOM4Q9ULL8 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
SHROOM4Q9ULL8 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC28.63■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms