Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB4Q8WW32 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 PRAL-201ENST00000624952 3286 ntBASIC15.28■□□□□ 0.04
HMGB4Q8WW32 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 TSPY26P-202ENST00000565928 3884 ntBASIC15.28■□□□□ 0.04
HMGB4Q8WW32 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 AC024909.3-201ENST00000611513 2257 ntBASIC15.28■□□□□ 0.04
HMGB4Q8WW32 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 AC010491.1-201ENST00000563101 2797 ntBASIC15.28■□□□□ 0.04
HMGB4Q8WW32 AC132872.4-202ENST00000622924 2756 ntBASIC15.28■□□□□ 0.04
HMGB4Q8WW32 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 PCDHA1-201ENST00000378133 2726 ntBASIC15.28■□□□□ 0.04
HMGB4Q8WW32 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 KRTAP19-9P-201ENST00000421795 191 ntBASIC15.28■□□□□ 0.04
HMGB4Q8WW32 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 AP003171.2-201ENST00000528208 925 ntBASIC15.28■□□□□ 0.04
HMGB4Q8WW32 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 AC105129.2-201ENST00000559536 390 ntBASIC15.28■□□□□ 0.04
HMGB4Q8WW32 AC106820.3-201ENST00000561653 397 ntBASIC15.28■□□□□ 0.04
HMGB4Q8WW32 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 AC138627.1-207ENST00000641560 1006 ntBASIC15.28■□□□□ 0.04
HMGB4Q8WW32 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 MYB-201ENST00000316528 3571 ntTSL 5 BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 MYB-241ENST00000616088 3573 ntTSL 5 BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC15.28■□□□□ 0.04
HMGB4Q8WW32 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HMGB4Q8WW32 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
HMGB4Q8WW32 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC15.27■□□□□ 0.04
HMGB4Q8WW32 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HMGB4Q8WW32 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.27■□□□□ 0.04
HMGB4Q8WW32 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HMGB4Q8WW32 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC15.27■□□□□ 0.04
HMGB4Q8WW32 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HMGB4Q8WW32 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
HMGB4Q8WW32 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
HMGB4Q8WW32 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
HMGB4Q8WW32 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.27■□□□□ 0.04
HMGB4Q8WW32 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.04
HMGB4Q8WW32 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HMGB4Q8WW32 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HMGB4Q8WW32 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HMGB4Q8WW32 MIR769-201ENST00000390225 118 ntBASIC15.27■□□□□ 0.04
HMGB4Q8WW32 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC15.27■□□□□ 0.04
HMGB4Q8WW32 CYP46A4P-201ENST00000414953 267 ntBASIC15.27■□□□□ 0.04
HMGB4Q8WW32 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HMGB4Q8WW32 AC016700.1-201ENST00000429424 312 ntBASIC15.27■□□□□ 0.04
HMGB4Q8WW32 TSACC-208ENST00000481479 741 ntTSL 2 BASIC15.27■□□□□ 0.04
HMGB4Q8WW32 AC021723.1-201ENST00000486306 515 ntBASIC15.27■□□□□ 0.04
HMGB4Q8WW32 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC15.27■□□□□ 0.04
HMGB4Q8WW32 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HMGB4Q8WW32 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
HMGB4Q8WW32 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC15.27■□□□□ 0.04
HMGB4Q8WW32 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC15.27■□□□□ 0.04
HMGB4Q8WW32 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC15.27■□□□□ 0.04
HMGB4Q8WW32 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC15.27■□□□□ 0.04
HMGB4Q8WW32 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HMGB4Q8WW32 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
HMGB4Q8WW32 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HMGB4Q8WW32 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.03
HMGB4Q8WW32 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HMGB4Q8WW32 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
HMGB4Q8WW32 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
HMGB4Q8WW32 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC15.27■□□□□ 0.03
HMGB4Q8WW32 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
HMGB4Q8WW32 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC15.27■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms