Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC13.72□□□□□ -0.21
RNFT1Q5M7Z0 TPI1-206ENST00000488464 791 ntTSL 5 BASIC13.72□□□□□ -0.21
RNFT1Q5M7Z0 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC13.72□□□□□ -0.21
RNFT1Q5M7Z0 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC13.72□□□□□ -0.21
RNFT1Q5M7Z0 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC13.72□□□□□ -0.21
RNFT1Q5M7Z0 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RNFT1Q5M7Z0 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC13.72□□□□□ -0.21
RNFT1Q5M7Z0 AC106820.3-201ENST00000561653 397 ntBASIC13.72□□□□□ -0.21
RNFT1Q5M7Z0 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC13.72□□□□□ -0.21
RNFT1Q5M7Z0 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC13.72□□□□□ -0.21
RNFT1Q5M7Z0 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC13.72□□□□□ -0.21
RNFT1Q5M7Z0 LINC01670-203ENST00000624859 977 ntTSL 3 BASIC13.72□□□□□ -0.21
RNFT1Q5M7Z0 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC13.72□□□□□ -0.21
RNFT1Q5M7Z0 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
RNFT1Q5M7Z0 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
RNFT1Q5M7Z0 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC13.72□□□□□ -0.21
RNFT1Q5M7Z0 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
RNFT1Q5M7Z0 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC13.72□□□□□ -0.21
RNFT1Q5M7Z0 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC13.72□□□□□ -0.21
RNFT1Q5M7Z0 BID-213ENST00000615414 2236 ntTSL 5 BASIC13.72□□□□□ -0.21
RNFT1Q5M7Z0 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
RNFT1Q5M7Z0 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
RNFT1Q5M7Z0 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC13.72□□□□□ -0.21
RNFT1Q5M7Z0 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RNFT1Q5M7Z0 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
RNFT1Q5M7Z0 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RNFT1Q5M7Z0 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RNFT1Q5M7Z0 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
RNFT1Q5M7Z0 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
RNFT1Q5M7Z0 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
RNFT1Q5M7Z0 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
RNFT1Q5M7Z0 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
RNFT1Q5M7Z0 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
RNFT1Q5M7Z0 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.21
RNFT1Q5M7Z0 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
RNFT1Q5M7Z0 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.21
RNFT1Q5M7Z0 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC13.71□□□□□ -0.21
RNFT1Q5M7Z0 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
RNFT1Q5M7Z0 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC13.71□□□□□ -0.21
RNFT1Q5M7Z0 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
RNFT1Q5M7Z0 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
RNFT1Q5M7Z0 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
RNFT1Q5M7Z0 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
RNFT1Q5M7Z0 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
RNFT1Q5M7Z0 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
RNFT1Q5M7Z0 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC13.71□□□□□ -0.21
RNFT1Q5M7Z0 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC13.71□□□□□ -0.21
RNFT1Q5M7Z0 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC13.71□□□□□ -0.21
RNFT1Q5M7Z0 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC13.71□□□□□ -0.21
RNFT1Q5M7Z0 AC138466.3-201ENST00000619983 221 ntBASIC13.71□□□□□ -0.21
RNFT1Q5M7Z0 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
RNFT1Q5M7Z0 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
RNFT1Q5M7Z0 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
RNFT1Q5M7Z0 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
RNFT1Q5M7Z0 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
RNFT1Q5M7Z0 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
RNFT1Q5M7Z0 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC13.71□□□□□ -0.21
RNFT1Q5M7Z0 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
RNFT1Q5M7Z0 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
RNFT1Q5M7Z0 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC13.71□□□□□ -0.22
RNFT1Q5M7Z0 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC13.71□□□□□ -0.22
RNFT1Q5M7Z0 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
RNFT1Q5M7Z0 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
RNFT1Q5M7Z0 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
RNFT1Q5M7Z0 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
RNFT1Q5M7Z0 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
RNFT1Q5M7Z0 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 AC004898.1-201ENST00000451057 766 ntBASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 KC6-205ENST00000599934 556 ntTSL 4 BASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 AL603764.1-201ENST00000636452 321 ntBASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 REXO1L4P-201ENST00000605109 1937 ntBASIC13.7□□□□□ -0.22
RNFT1Q5M7Z0 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms